Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 981 a.a., EAL domain-containing protein from Paraburkholderia sabiae LMG 24235

 Score = 93.2 bits (230), Expect = 5e-23
 Identities = 106/413 (25%), Positives = 172/413 (41%), Gaps = 20/413 (4%)

Query: 240 DPASGLPNRQYVVSRLNGWLSEPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLV 299
           DP +GL NR  +   +    +E    AL    LD  +  +  +G+   DE +R +A ++V
Sbjct: 528 DPLTGLLNRLGIEHAIERQCAENGPWALAYLDLDRFKVFNDLFGHGTGDEILRQVAARIV 587

Query: 300 QQLNEITPSV-IARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGCKPNE-NFA 357
           ++L    P V I RI   EF  +++++  D+     + ++  +N        +  +   +
Sbjct: 588 ERLG---PDVAIGRIGGDEFVCVLSNMTIDEAIARCREIVEALNSAPVPVDTRAFQVRGS 644

Query: 358 IGVAERVGQMKVSDILAQADNALQKALKDNKTFHWFETTEQQIFTREQWRDNLSHAISNK 417
           IGV E     +V D LA AD A + A +               F       NL  A+   
Sbjct: 645 IGVVECAQGERVRDALAYADRACRAAKRGGSARLVALRKGAPAFEERTAEINLIEALGQS 704

Query: 418 KFK----FRWQPIQFCNGDG-VTQRELYCQLELGD-KLTHAGQFMPYIELLSLGSLLDKC 471
           +         QPI            E+  ++   D  +  AG+ +   E       +D+ 
Sbjct: 705 RLPDGLFLVMQPIMSMREPTKALDFEVLLRMRSPDGAVATAGKLIAAAEDSGTIVEIDRW 764

Query: 472 LIETVY----EQKLLERNYEPLAINLTHQSLSDSQFHQWLNHFL-RNAPQVERMCFEIPE 526
           ++ T      E +    N   + +NL+  SL+D  F   L   L R    V  +C EI E
Sbjct: 765 VLSTTLAWLSEHRASLVNTRFVCVNLSGGSLNDEHFLDELFALLSRYEDVVHYLCIEITE 824

Query: 527 AGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAYYDEAS 586
           +    DLE   R    + D GAK  ID FG    S+ YL+ L    +K+D  F      +
Sbjct: 825 SVALHDLEHTERFIARVHDMGAKIAIDDFGAGHTSLRYLKKLSADALKIDGEFV-RTMCN 883

Query: 587 HNSELC--RAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGF-IAPPE 636
           H +++    AII++A  L ++ I   +++   L   NEL  D  QGF IA P+
Sbjct: 884 HPADIAIVEAIISLAHNLGMRSIAEWVEDLETLRALNELGVDYVQGFGIAKPQ 936