Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 695 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Paraburkholderia sabiae LMG 24235

 Score = 99.8 bits (247), Expect = 4e-25
 Identities = 107/435 (24%), Positives = 188/435 (43%), Gaps = 26/435 (5%)

Query: 216 SAQLKHLFQSLDEEVGSLRKKNLTDPASGLPNRQYVVSRLNGWLSEPSSG----ALFLAK 271
           +A L       ++E+G L    L D  + LPNR  +  RL+  LS+        AL    
Sbjct: 246 NAALTRSLAQANQELGYLA---LHDALTKLPNRVLLECRLDNALSKAHEDGGQFALMFMD 302

Query: 272 LDWLEEVHSKYGYQVRDETIRLLAEKLVQQLNEITPSVIARIAAFEFAFLVTDVEHDQIS 331
           LD  + V+  YG+QV D  +  +AE+L   +       +AR+   EF  LV D +    +
Sbjct: 303 LDGFKVVNDAYGHQVGDRLLVQVAERLAAAVRG--KDTLARVGGDEFVLLVPDEDQAGAT 360

Query: 332 KYLQTLIRTINQEISKAGCKPNENFAIGVAERVGQ-MKVSDILAQADNALQKALKDNKTF 390
                L+  I+      G     + +IG+A        V D L  AD A+  A   ++  
Sbjct: 361 AVASRLLAAISAPFQADGHDLRISTSIGIAMCPADGASVHDALMHADAAMYHAKSMSRNA 420

Query: 391 HWFETTE--QQIFTREQWRDNLSHAIS-NKKFKFRWQPIQFCNGDGVTQ--RELYCQLEL 445
           H F  T   + +  + Q   +L  AI  N+     +QP QF   DG  +    L   +  
Sbjct: 421 HCFFDTSMNENMQGQLQLTQDLRAAIERNELVLLHYQP-QFAAPDGPIRGVEALVRWIHP 479

Query: 446 GDKLTHAGQFMPYIELLSLGSLLDKCLIETVYEQ--KLLERNYEP--LAINLTHQSLSDS 501
              L    +F+P  E   L   + + +++    Q  + L+       +A+NL+    S  
Sbjct: 480 KRGLIGPDEFIPLAEKTGLIVPIGEWVLDEACRQVREWLDSGTCDWNVAVNLSPVQFSHP 539

Query: 502 QFHQWLNHFL-RNAPQVERMCFEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFG 560
           Q    +   L R+  +   +  E+ E+    D+++  R+   + D G +  ID FG  + 
Sbjct: 540 QLTALVRDTLERHRVEPRHLTIEVTESAAMRDVDASLRILQTLHDMGVRISIDDFGTGYS 599

Query: 561 SMSYLQGLRPSYVKLDQSFAYYDEASHNSE---LCRAIINVAKGLDIQVIVTGIQEKAQL 617
           S+ YL+ L  S +K+D+ F    E +H++E   +  +++ + + L I ++  G++   Q 
Sbjct: 600 SLMYLKRLPASELKIDRGFV--RELAHDAEDAAIVSSVVALGQTLGIDIVAEGVETTTQK 657

Query: 618 ERFNELKTDAYQGFI 632
           E    L  ++ QGF+
Sbjct: 658 EFLTRLGCNSLQGFL 672