Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 944 a.a., EAL domain-containing protein from Paraburkholderia sabiae LMG 24235

 Score =  107 bits (268), Expect = 2e-27
 Identities = 104/431 (24%), Positives = 197/431 (45%), Gaps = 17/431 (3%)

Query: 224 QSLDEEVGSLRKKNLTDPASGLPNRQYVVSRLNG-WLSEPSSGA---LFLAKLDWLEEVH 279
           Q LD     L  +N  D  +GLPNR ++  RL   WL     GA   +    LD  + V+
Sbjct: 500 QELDAANARLLHENYHDALTGLPNRSHLYERLEAAWLGFSRRGAPLSVLFIDLDRFKVVN 559

Query: 280 SKYGYQVRDETIRLLAEKLVQQLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIR 339
              G+   D  +  +A +L + L      ++AR+   EFA +V       +    + ++ 
Sbjct: 560 DSLGHLFGDALLVEVAGRLRECLRR--DDLLARLGGDEFAVVVPGASLQTVLSLAERILA 617

Query: 340 TINQEISKAGCKPNENFAIGV--AERVGQMKVSDILAQADNALQKALKDNK-TFHWF-ET 395
             +   S        + ++GV  A+     + +D+L  AD A+ +     + +F  F + 
Sbjct: 618 AFDTPFSIGEQTVFTSCSVGVVSADSAHHREPADLLRDADAAMYRVKNRGRDSFAVFNQQ 677

Query: 396 TEQQIFTREQWRDNLSHAIS-NKKFKFRWQPI-QFCNGDGVTQRELYCQLELGDKLTHAG 453
             +++  + +    L +A+  N +    +QPI    +G+ V    L    +   ++   G
Sbjct: 678 MRRELSDQIETEGALRNALKRNDELVPYFQPIVDIASGELVALEALIRWQQPNGEVWAPG 737

Query: 454 QFMPYIELLSLGSLLDKCLIETVYEQKLLERNYE--PLAINLTHQSLSDSQFHQWLNHFL 511
           +F+P +E L L   LD  ++  V E      + +  P+ +NL+  S++  +F   L   L
Sbjct: 738 RFLPAVEGLKLIGRLDMYMLTRVAEILAQPEHVDWPPVQVNLSSYSITRPEFADELLELL 797

Query: 512 -RNAPQVERMCFEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRP 570
            R      R+  E+ E  + ++ +        + DNG    +D FG  F S+SY+   R 
Sbjct: 798 KRYGVHPSRISLELTEGALVAEPDLARNTMQSLADNGMCVVLDDFGTGFSSLSYVHQYRF 857

Query: 571 SYVKLDQSFAY-YDEASHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQ 629
           S +K+D+SF +   +++ +  + RAI+ +A+ L++ V+  GI+++A LE    +     Q
Sbjct: 858 SGLKIDKSFVFELTQSARSRAIVRAIVRMAESLELTVVAEGIEDQATLELLRTIGAAHGQ 917

Query: 630 GF-IAPPENIE 639
           G+ +A P ++E
Sbjct: 918 GYHLARPMSLE 928