Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 561 a.a., GGDEF and EAL domain-containing protein from Paraburkholderia sabiae LMG 24235

 Score =  108 bits (270), Expect = 6e-28
 Identities = 95/427 (22%), Positives = 186/427 (43%), Gaps = 57/427 (13%)

Query: 240 DPASGLPNRQYVVSRLNGWLSEPSSGAL--FLAKLDWLEEVHSKYGYQVRDETIRLLAEK 297
           D  +GL NR+ +++RLN  + + ++ ++      LD  +E++  +G+   DE +R++ E+
Sbjct: 120 DALTGLINRRELLTRLNRLIDDGTASSIDVLFIDLDRFKEINDSFGHAAGDEVLRVIGER 179

Query: 298 LVQQLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTINQEISKAGCKPNENFA 357
           +   L E   +  +RI   EF   V D   D  ++  + ++  + + I  A  + + + +
Sbjct: 180 ISGSLGE--RAYASRIGGDEFVVFVVDAPEDAAARVARNIVVRMRERIETASVRASVSAS 237

Query: 358 IGVAER-VGQMKVSDILAQADNALQKALKDNKTFHWFETTE--QQIFTREQWRDNLSHAI 414
           IG+A   +       +L  AD A+ +A +   +  W  + E  Q++  R + R +L  A 
Sbjct: 238 IGLARYPISAANADQLLRNADTAMYQAKRQGGSHVWSFSKEDAQRLSHRLRLRADLESAS 297

Query: 415 SNKKFKFRWQPIQFCNGDGVTQRELYCQLELGDKLTHAGQFM-----PYIELLSLGSLLD 469
           +  +F+  +QP                QL+L     +  + +     P +  L+  + LD
Sbjct: 298 AACQFELHYQP----------------QLDLDTGCIYGAEALLRWNHPQLGFLAPAAFLD 341

Query: 470 KCLIETVYEQ----------------KLLERNYEPLAINLTHQSLSDSQFHQWLNHFLRN 513
             L    YE                 +  +R    +A+NL+   + ++     L   +  
Sbjct: 342 VLLESPTYEATADWLIHLALRQAAKWQATDRKGFKVAVNLSAAMIQNTD----LAALVSK 397

Query: 514 APQVERMC-----FEIPEAGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGL 568
           A     +C      E+ E  + SD     R    +R  GA   +D FG  + S+SYL  L
Sbjct: 398 AADAAGVCPSVLDIEVTETVIVSDFLGAARSLAAVRKLGATVSLDDFGTGYSSLSYLTRL 457

Query: 569 RPSYVKLDQSFAY---YDEASHNSE-LCRAIINVAKGLDIQVIVTGIQEKAQLERFNELK 624
               +K+D+SF      DE    +  +  A++ +A+ L ++ +  G++ + QL   ++L 
Sbjct: 458 PVDRIKIDKSFVQQLTVDETCRQARAMIEAMVALARALGLETVAEGVENEEQLAFVSKLG 517

Query: 625 TDAYQGF 631
            DA QG+
Sbjct: 518 CDAAQGY 524