Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 650 a.a., EAL domain-containing protein from Pectobacterium carotovorum WPP14

 Score =  176 bits (445), Expect = 4e-48
 Identities = 155/645 (24%), Positives = 287/645 (44%), Gaps = 22/645 (3%)

Query: 1   MTLFRQIYSLLFSLFLLVVASLGYVQFTETQSFLTKQMESDLNNASTSLGLMLTPALEAG 60
           M+L++Q+   +    L++ +   +V    ++     Q+ S   +A+T+LGL LTP ++  
Sbjct: 1   MSLYKQLLIAICLFVLIIFSGSFFVSLENSREQYNNQLHSHAQDAATALGLSLTPNID-- 58

Query: 61  DTVAAETLVNVIFEGGYYNNIKLIWMVDGKQQ-EWNNPIKIDDVPQWFINLNLFKTIKKE 119
           D    E +V+ IF+ GY+++I++  +  G    E      I DVP WF+ L   +    E
Sbjct: 59  DPAMVELMVSSIFDSGYFSSIRVRDLKTGNVTLERTASPDIPDVPLWFVRLVNLQPGAGE 118

Query: 120 STITSGWLQLAQLEITAHPGFGYHELWRIMSNTLIVFSLLFLVAIFTARLGLTWILKPLN 179
           + +  GW Q A++E+ +HP F    LWR  + T +       + +F   L L   L+PL+
Sbjct: 119 AIVMRGWEQAAKVEVVSHPMFAVTRLWRSSTATFLWLLGCGTLGVFLGALFLRRQLRPLD 178

Query: 180 ALSEHAKKIAARQFGPDMPLPSTTELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKNLT 239
            + + +  I  R+F     LP+T E + +  A N M ++LK LF+   E    LR++   
Sbjct: 179 YIVDQSLAITRREFLSQPDLPNTPEFRRVAQAMNLMVSKLKTLFEEEAERSERLRQEAYQ 238

Query: 240 DPASGLPNRQYVVSRLNGWLS--EPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEK 297
           DP +GL NR+    + N  L+  E + G L + ++  L  ++ + G Q  D  +  +   
Sbjct: 239 DPQTGLNNRRAFDMQFNDKLADEETAPGFLIMIRVQDLAGMNQRLGGQRTDALLASVGHI 298

Query: 298 L--VQQLNEITPSVIARIAAFEFAFLVTDVEHDQISKYLQTLIRTIN--QEISKAGCKPN 353
           L   Q+ +    S++ARI   EFA     +   +    +  L R I       +    P 
Sbjct: 299 LRKTQKQHTNAESLLARIRGGEFALFCPGLVDKEAYALIGELTRNIETLHLTGETDVSPV 358

Query: 354 ENFAIGVAERVGQMKVSDILAQADNALQKALKDNKTF--HWFE--TTEQQIFTREQWRDN 409
             F + V  R G    S +  Q D AL +A  D  T   H     + EQ    R  W + 
Sbjct: 359 AQFGM-VLFRPGDTAQS-LFIQGDQALTRAESDTDTTAPHAMPSVSAEQVETDRHMWFNL 416

Query: 410 LSHAISNKKFKFRWQPIQFCNGDG-VTQRELYCQLE--LGDKLTHAGQFMPYIELLSLGS 466
           L   +  ++ +   QP+  C+    V   ++  +++   G+ +  AG+F+P+I+     +
Sbjct: 417 LDPILEQERLQLFLQPVVACDDPSQVLHHKVLARIQDAQGNSIA-AGRFLPWIQRFGWDT 475

Query: 467 LLDKCLIETVYEQKLLERNYEPLAINLTHQSLSDSQFHQWLNHFLRNAPQVERMCFEIPE 526
            LD+ ++  V +   L ++   LA++L+  ++ +      L   L++ P V R      +
Sbjct: 476 RLDQTMLRGVLD--YLRQHDGNLALSLSGTTVLNLHLLADLLAPLKHQPDVARRLILELD 533

Query: 527 AGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSF-AYYDEA 585
                D      L  ++ ++G   G+ HFG +F  +  L     +Y+K+D S+    D+ 
Sbjct: 534 ENQLPDSAQLEALIKLLNEHGCALGLQHFGGRFNMIGNLSQWGLAYLKVDGSYIRNIDQE 593

Query: 586 SHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQG 630
                   A+      + + +I   ++   +L+   E+      G
Sbjct: 594 DDKQMFIEALYRATNSIALPLIAERVETAGELKVLQEMGLQGAMG 638