Pairwise Alignments

Query, 639 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 684 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score = 98.2 bits (243), Expect = 1e-24
 Identities = 117/538 (21%), Positives = 225/538 (41%), Gaps = 35/538 (6%)

Query: 125 GWLQLAQLEITAHPGFGYHELWRIMSNTLIVFSLLFLVAIFTARLGLTWILK-PLNALSE 183
           G   + +LE+  H G    EL R  +   IV S  FL+        +  ++  PL  L  
Sbjct: 129 GEYPVGRLEVAFHDGKVRSELVRQRAGAAIVLSGAFLLVTAVLLAAVRHLVTGPLTRLRN 188

Query: 184 HAKKIAARQFGPDMPLPSTTELKDLVTAFNSMSAQLKHLFQSLDEEVGSLRKKNLTDPAS 243
                A+      +   S  EL ++V A+N        L   +D+    + +    D  +
Sbjct: 189 SLHHNASVLMREPLVWSSRDELGEVVHAYNQ-------LLTEIDQRTEDIHQLANRDLLT 241

Query: 244 GLPNRQYVVSRLNGWLS----EPSSGALFLAKLDWLEEVHSKYGYQVRDETIRLLAEKLV 299
           GLPNR+ +  R+   ++    +  S AL  A +D  + V+   G++  D  +R++A+++ 
Sbjct: 242 GLPNRRLLEDRIGHAIALAGRQNRSIALLFADIDNFKVVNDTLGHKQGDALLRIIADRIH 301

Query: 300 QQLNEITPSVIARIAAFEFAFLVTDVEH-DQISKYLQTLIRTINQEISKAGCKPNENFAI 358
             +  +    +AR    EF  +V  +    + +   + LI TI   +           ++
Sbjct: 302 DIMRGM--DTVARWGGDEFVIVVESLNSAGEAASVAEKLIETIGVPVQLGSNLLRVGVSV 359

Query: 359 GVAERVGQ-MKVSDILAQADNALQKAL-KDNKTFHWFETT-EQQIFTREQWRDNLSHAIS 415
           G++        ++ ++  AD AL +A  +   TFH+F+     +   R      L  AI 
Sbjct: 360 GISMYPQDGADITTLIKNADMALFEAKGRGRNTFHFFDQAMNARALRRMDIEMALRQAIP 419

Query: 416 NKKFKFRWQP-IQFCNGDGVTQRELYCQLELGDKLTHAGQFMPYIELLSLGSLLDKCLIE 474
             + +  +QP I   +G       L      G+ L    +F+P  E   L   + + ++ 
Sbjct: 420 QNQLELHYQPKIASASGALAGVEALVRWRRPGEGLVQPDEFIPLAEESDLIVAVGEWVLN 479

Query: 475 TVYEQKLLERNYEP-------LAINLTHQSLSDSQFHQWLNHFL-RNAPQVERMCFEIPE 526
               Q    R++E        +A+NL+ +     +    +   + ++  + + +  E+ E
Sbjct: 480 EACRQI---RDWEARGFGEVAVAVNLSPRHFLHEKDVDGIFRIVDQSGVRPDLIEVEVTE 536

Query: 527 AGVYSDLESCTRLCNIIRDNGAKFGIDHFGRQFGSMSYLQGLRPSYVKLDQSFAY-YDEA 585
           +    + E      N +RD G    ID FG  + S+SYL+ L  + +K+D++F    +  
Sbjct: 537 STFMHEPEKVIGYLNRLRDRGFGIAIDDFGSGYSSLSYLRRLPITTLKIDRAFVMDIEHN 596

Query: 586 SHNSELCRAIINVAKGLDIQVIVTGIQEKAQLERFNELKTDAYQGFI----APPENIE 639
           + N+E+ RAII +A  + + +I  G++ + Q E          QG+      PP ++E
Sbjct: 597 ADNAEIIRAIIAMANAMGLGLIAEGVENRHQFEFLRHADCGVVQGYYFSRPLPPADLE 654