Pairwise Alignments

Query, 471 a.a., agglutination protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

 Score =  105 bits (263), Expect = 3e-27
 Identities = 106/434 (24%), Positives = 192/434 (44%), Gaps = 30/434 (6%)

Query: 24  PLSAQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDLTGGYGYEQTD 83
           PLSA +  L       +D N DL  A  ++ A++E V QA AG +P  +LTGG      D
Sbjct: 25  PLSANTD-LVSVYQEAVDNNADLAAARAQYGAQKEVVPQARAGLLP--NLTGG-----AD 76

Query: 84  SVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRY----SFEASADQW 139
             + R + +     +N  A   R     +L Q LF         DR+    + EA+ +Q 
Sbjct: 77  INNVRTQIDTPAATANRDAHSWRA----TLSQPLF-------RADRWFQLQAAEATNEQA 125

Query: 140 ALLAAA--EDMALDVSKAYLNYLRTDEVLKLAEKNLNSHKEIYDQIKQRTDSGLGSTADL 197
           AL  +A  +++ L  ++ Y   LR  + L   +   N+ K   DQ  +R D GL    D+
Sbjct: 126 ALQLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSNERFDVGLSDKTDV 185

Query: 198 SQISGRLARANANVISARNNLLDAKAQFVRVVAADPVDL---IQPVPDADMLPKDLNSSI 254
            Q       A AN I A+  + DA    + +       +   +  +P    LP D  + +
Sbjct: 186 LQSQASYDTARANRILAQRQVEDAFEALITLTNRQYNSIQGIVHTLPVLPPLPNDAKAWV 245

Query: 255 ADAEKNHPILKSAANDIRAAENERSSTQANYYPQV-SLELNGSWNNDVGGEDGVSAIASQ 313
             A + +  L ++   + AAE      +A + P + ++      +ND  G    +A  + 
Sbjct: 246 ETAGRQNLNLLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDNDALGFSNPNAFGTP 305

Query: 314 NVGGYSNDIVAMVRVKYNLFAGGKDLAREKESAYKLSEAKEIRQRAQREVVEGVNLAWNA 373
             G      + + R+   +++GG   ++ +ES  +L + ++ R+  +R+VVE       A
Sbjct: 306 YRGDVEQRTIGL-RLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLRRQVVENTRNLHRA 364

Query: 374 YEMLAPQKQYIRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDYLQAEYDE 433
                 Q Q  R  +I+ +    A    + +G R+++D+LD++ +L+ + ++Y  + YD 
Sbjct: 365 VNTDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNYNNSRYDY 424

Query: 434 TIAKYRVLNSTGRL 447
            +   R+  + G L
Sbjct: 425 ILDNLRLKQAAGTL 438