Pairwise Alignments

Query, 471 a.a., agglutination protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 500 a.a., outer membrane channel protein TolC from Serratia liquefaciens MT49

 Score = 96.3 bits (238), Expect = 2e-24
 Identities = 100/427 (23%), Positives = 179/427 (41%), Gaps = 29/427 (6%)

Query: 27  AQSQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTVDLTGGYGYEQTDSVS 86
           +Q++ L Q      ++NPDLR       A  E++N+A +  +P + L+ GY +  T+   
Sbjct: 20  SQAENLLQVYKQARESNPDLRKTAADRDAAFEKINEARSPLLPQLGLSAGYTH--TNGYR 77

Query: 87  TRRRKNVGDVDSNGVAELNRGEFGISLKQMLFDGFYTSSEVDRYSFEASADQWALLAAAE 146
             R KN  D  S  +A L +  F +S  + L     T+   D  +F+ S+ Q        
Sbjct: 78  DSRDKN-SDATSGSLA-LTQTIFDMSKWRALTLQEKTAGISD-VTFQTSSQQ-------- 126

Query: 147 DMALDVSKAYLNYLRTDEVLKLAEKNLNSHKEIYDQIKQRTDSGLGSTADLSQISGRLAR 206
            + LD + AY N L   + L   +    +     DQ  QR + GL +  D+         
Sbjct: 127 -LILDTATAYFNVLSAIDSLSYTQAQKQAVYRTLDQTTQRFNVGLVAITDVQNARSNYDT 185

Query: 207 ANANVISARNNLLDAKAQFVRVVAADPVDLIQPVPD--ADMLPKDLNSSIADAEKNHPIL 264
             A  ++ARN L +A  +  +V      +L     D  +   P+ +N+ + +AE  +  L
Sbjct: 186 VLAAEVTARNTLDNALEKLRQVTGTFYPELASLNTDRFSTQRPEAVNNLLKEAESRNLSL 245

Query: 265 KSAANDIRAAENERSSTQANYYPQV----SLELNGSWNNDVGGEDGVSAIASQNVGGYSN 320
            SA      A  +  S Q  Y P +    S  ++ + NN        + I    VG    
Sbjct: 246 LSARLSQDLAREQIRSAQTGYMPTIDFNASTAVSNTKNNGSRNSTPDADIGQNKVG---- 301

Query: 321 DIVAMVRVKYNLFAGGKDLAREKESAYKLSEAKEIRQRAQREVVEGVNLAWNAYEMLAPQ 380
                +     L++GG+  ++ +++ Y    A E  + A R VV+ V  ++N        
Sbjct: 302 -----LSFNMPLYSGGQTNSQVQQAQYNFVGASEQLESAHRNVVQTVRSSFNNVNASISS 356

Query: 381 KQYIRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDYLQAEYDETIAKYRV 440
               +  V++A+ +  A    + +G R+++D+LD    L+ A++    A Y   I +  +
Sbjct: 357 INAYKQAVVSAQSSLDAMEAGYQVGTRTIVDVLDATTTLYNAKQQLSSARYTYLINQLNI 416

Query: 441 LNSTGRL 447
             + G L
Sbjct: 417 KFALGTL 423