Pairwise Alignments

Query, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 473 a.a., HlyD family secretion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  177 bits (448), Expect = 9e-49
 Identities = 125/435 (28%), Positives = 215/435 (49%), Gaps = 22/435 (5%)

Query: 53  RLIIWALAAMVACFLLWAGFAELDTVTTGSGKVIPSSQVQVIQSLDGGIMQELFVRDGDL 112
           R+ +W L   +   LLWA F  +D V T  GK++P+ + + IQS D   ++ + V DG  
Sbjct: 58  RVAMWLLIGFMVLTLLWAVFGRMDVVATAQGKIVPNDRTKTIQSFDTASVKAIHVTDGQR 117

Query: 113 VTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTNAIRMRAELDSILISDMTSDWREQVKITK 172
           V  G  L+ +D T  ++D  +   E         R +A LD++           + ++ +
Sbjct: 118 VKAGDLLIELDATTTQADTDRLVGEQAVAVLQVARGKALLDALASG-------REPRLAR 170

Query: 173 KDLVFPDSIIQAEPALVKRQQEEYSGRLDNLSNQLEILVRQIQQRQQEIDDLASKTTTLT 232
              V     ++A+  L+  Q  EYS RL  +       V    +R+ E+         L 
Sbjct: 171 PAGVDDARYLEAQ-RLLAGQHAEYSARLSRI-------VADTARREAELRSTQELVKKLE 222

Query: 233 TSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDEAIL 292
            +M +  +  +  + L  +  V     L+ E+   + + +L + R    +++A L E + 
Sbjct: 223 QTMPIAQQRAQDFKNLVAQNFVSRHGYLEREQERIEQEADLANQRSRLREIEATLRE-VQ 281

Query: 293 KRREAVFVYAADLRAQLN---ETQTRLSRMNEAQVGAQDKVSKAIITSPVNGTIKTVHIN 349
            +R+A+   A   RA L+   E Q RL  + +    A  +     +TSPV+GT++ + ++
Sbjct: 282 GQRQALM--AETRRATLDSSTEAQQRLDALGQEWKKADSRGRLMRLTSPVDGTVQQLVVH 339

Query: 350 TLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGT 409
           T GGVV     ++ IVPS++ L +E     KDI F+  G  A VK+  + +T+YG +   
Sbjct: 340 TEGGVVTEAQPLMVIVPSDNPLEVEAFFENKDIGFVKAGQEAEVKIETFQYTKYGTIDAA 399

Query: 410 VEHISADTSQDEEGNSFYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILEYI 469
           V  +S D   DE+    Y  +VR ++++L+  DGT++ + PGM  TV+V TGQR ++EY 
Sbjct: 400 VSSVSHDAINDEKRGLIYSSRVRMDKTTLMV-DGTEVSLSPGMAVTVEVKTGQRRVIEYF 458

Query: 470 LNPILRAKDTALRER 484
           L P+L+    +LRER
Sbjct: 459 LAPLLQHTSESLRER 473