Pairwise Alignments

Query, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 396 a.a., Type I secretion system, membrane fusion protein LapC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  234 bits (598), Expect = 3e-66
 Identities = 146/437 (33%), Positives = 227/437 (51%), Gaps = 64/437 (14%)

Query: 50  SGHRLIIWALAAMVACFLLWAGFAELDTVTTGSGKVIPSSQVQVIQSLDGGIMQELFVRD 109
           SG   I+   + +     +WA F  LD V+TG+GKVIPSS+ QV+QSLDGGI+ +L VR+
Sbjct: 22  SGAGRIVLICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVRE 81

Query: 110 GDLVTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTNAIRMRAELDSILISDMTSDWREQVK 169
           GD V   Q + R+D TR  S+  +   +      ++ R+ AE++ +              
Sbjct: 82  GDRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDL-------------- 127

Query: 170 ITKKDLVFPDSIIQAEPALVKRQQEEYSGRLDNLSNQLEILVRQIQQRQQEIDDLASKTT 229
                L FP  +    P L+  +   Y  R                 R Q    LA    
Sbjct: 128 ----PLAFPAEL-NGWPDLIAAETRLYKSR-----------------RAQ----LADTEA 161

Query: 230 TLTTSMQLISRELELTRPLAKKGIVPEVELLKLERAVNDAQGELNSLRLLRPKLKAALDE 289
            L  ++  +++EL +T+ L K G    VE+L+L+R  +D   ++  LR            
Sbjct: 162 ELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQ---------- 211

Query: 290 AILKRREAVFVYAADLRAQLNETQTRLSRMNEAQVGAQDKVSKAIITSPVNGTIKTVHIN 349
                      Y    R  L++    +  ++    G +D V++  + SPV G +K + + 
Sbjct: 212 -----------YYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVT 260

Query: 350 TLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLHTGLPAVVKVTAYDFTRYGGLKGT 409
           T+GGV+ P  +++EIVP +D+LLIET++ P+DIAF+H G  A+VK+TAYD+  YGGL G 
Sbjct: 261 TIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGV 320

Query: 410 VEHISADTSQDEEGNS--FYLIKVRTEESSLIKDDGTQMPIIPGMLTTVDVITGQRSILE 467
           VE IS DT QD+      +Y + +RT +  L    G +  I+PGM+ TVD+ TG+++I++
Sbjct: 321 VETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVD 380

Query: 468 YILNPILRAKDTALRER 484
           Y++ P  RAK+ ALRER
Sbjct: 381 YLIKPFNRAKE-ALRER 396