Pairwise Alignments

Query, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 722 a.a., Protein secretion ABC efflux system, permease and ATP-binding protein from Pseudomonas putida KT2440

 Score =  381 bits (978), Expect = e-110
 Identities = 236/704 (33%), Positives = 371/704 (52%), Gaps = 9/704 (1%)

Query: 15  SASQRVIVDPLLDCLVLLTEHFGNPCSSDSLAAGLPLSGAVLTPDLLPQAASRAGLAAKL 74
           +A+ R  + P L+ ++ +  H+    S   +          L  ++L   A +AGLA + 
Sbjct: 19  AAAHRPDLGPWLEVMLQVAHHYRLDVSPQRIRLAAAEDARPLN-EILRHMARQAGLALRF 77

Query: 75  SRKGLNEISPILLPCILLLKDKKACILREFDLESDRAVIQLPETGGEEILTIESLETLYV 134
                  +     P +L L D +  ++     E D AV+   + G    L  ++L+    
Sbjct: 78  VHFDAKGLRQWRTPLVLELDDGQLAVVESVTEEDDLAVVFAGDQGLTSRLPRDTLKGRIS 137

Query: 135 GYLFLVKQEYRGDMGFDVYLHDNKTHWLVQ-TLKDSAPIYRDALIASVLVNIFALVSPLF 193
               L       D+  D Y      HW  +  L+D  P Y   +IAS++ N+ AL   LF
Sbjct: 138 RVALLRPARPLRDVRTDDYTAPYDRHWFARIVLRDLRP-YGQVMIASLVANVLALAGVLF 196

Query: 194 IMNVYDKVVPNLAFDSLWVLAIGASIAYLFDLVMRQLRSYLIDVAGKKVDIIVSSRLFAK 253
            M VYD+V+P  +  +L+VL  G  +A +FD  MR LR  + D+ GK+ D+ VS  ++  
Sbjct: 197 SMQVYDRVIPAESLPTLYVLFGGVVLALVFDFSMRLLRLKVTDLLGKRADLRVSDLVYGH 256

Query: 254 AIGIPLEKRSPSIGGMAKQLGEFDSIREILTSATITTLVDLPFALFFLIVIYIVAGDLAV 313
           A+ +    R  S G    QL E +SIR+++TS+T T L DLPF L FL V +++ G L  
Sbjct: 257 ALRLRNSVRPKSTGSFISQLRELESIRDLITSSTATVLADLPFFLLFLFVFWLIGGVLVF 316

Query: 314 IPVVGGMIIIGFTLYTQPKLKAAIEEGNKFSSLKHGHLIESLSALESIKANGAEGIVQKS 373
           IP+V  + ++   L  Q +L        + S+L++  L+ES+  L+ IKA  AE   ++ 
Sbjct: 317 IPLVALLAMVLPGLLAQRRLARLANASMRESALRNAMLVESIQGLDEIKALQAEARFERQ 376

Query: 374 WQQMIGHSANWQLKSKKLSNSVSNTANFIVQFTVVCVVILGVYRVSDNLISMGGIIAAVM 433
           W Q     A+  L+ + L+N +      +       V+++G   V    ++ G ++AA M
Sbjct: 377 WNQYNAACAHTNLRLRTLTNGLVTWTQNVQGAVFAVVIVIGAPMVIAGDLTTGSLVAASM 436

Query: 434 LSSRAIAPMAQLAGLMTRANHTASALRQLNELM---LQEDEFENKGHLVSKQRLIGKINA 490
           LSSR +AP+AQL  ++TR      AL+ L++LM   +   E E + HL +   + G+   
Sbjct: 437 LSSRMMAPLAQLTHVLTRWQQAKVALQGLDKLMQSPVDHPEGEARVHLPA---IHGEYRL 493

Query: 491 DHVGFSYPGSEKPVLHPLSLTINPGERIAIIGRNGSGKSTLAKLLVGLFQPTTGSLRYDG 550
               F Y     PVL+   L I PGERIA++GRNG+GKSTL + L G      G +  DG
Sbjct: 494 RQANFRYSEDYPPVLNIGRLDIQPGERIAVLGRNGAGKSTLLQALGGAMDLVQGEISLDG 553

Query: 551 VDSAQIHPSDLRRNFGYLPQDVTLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVSQFTHL 610
           +  A + P+DLRR+ G LPQ   LFHGT+R+N+  G  Q ++ +L+ A+  +G   F   
Sbjct: 554 IAMAHLDPADLRRDVGLLPQYARLFHGTLRENLTLGAGQASDQELVAALAATGALDFVRR 613

Query: 611 EAEGLDQQVGEGGMSLSRGQRQTVALARATLNDPPVLLMDEPTASLDARAEQQFIRSMQN 670
             +G+D  + EGG+ LS GQRQ + L+R  +  P VLL+DEPTASLD   E++ + +++ 
Sbjct: 614 LPKGMDHLILEGGLGLSGGQRQALVLSRLLVRQPQVLLLDEPTASLDDMTERKLLDNLER 673

Query: 671 VSKDRTLLLITHKMHLLQLVDRIIVLERGHVVADGPKAEVLEKL 714
             + RTL++ TH++ +LQ VDRI+VL+ G +V D  +   L KL
Sbjct: 674 FCQGRTLVIATHRLSVLQRVDRILVLDAGRIVIDDARDAALAKL 717