Pairwise Alignments

Query, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 726 a.a., Type I secretion system ATPase, LssB family LapB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  383 bits (983), Expect = e-110
 Identities = 227/680 (33%), Positives = 368/680 (54%), Gaps = 5/680 (0%)

Query: 35  HFGNPCSSDSLAAGLPLSGAVLTPDLLPQAASRAGLAAKLSRKGLNEISPILLPCILLLK 94
           H+   CS  S+ A  P          L Q A +AGL+           S   LP ++ L+
Sbjct: 30  HYRVACSPGSIQANAPWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELR 89

Query: 95  DKKACILREFDLESDRAVIQLPETGGEEILTIESL--ETLYVGYLFLVKQEYRGDMGFDV 152
           D +  ++   + E    V  + E G    LT+  L  E LYV  L  +      D   D 
Sbjct: 90  DGQLLVIEHVNGEEAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSA--LKDSRVDR 147

Query: 153 YLHDNKTHWLVQTLKDSAPIYRDALIASVLVNIFALVSPLFIMNVYDKVVPNLAFDSLWV 212
           Y+   K  W+ + +      Y   ++A+ L+N+ +L   +F M VYD+V+P  ++ +L+V
Sbjct: 148 YISRFKPDWMRELVLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYV 207

Query: 213 LAIGASIAYLFDLVMRQLRSYLIDVAGKKVDIIVSSRLFAKAIGIPLEKRSPSIGGMAKQ 272
           L+ G  +A LF  ++R+ R++++DV GK+ D+ +S R+F  A+ +       S G    Q
Sbjct: 208 LSFGVLVAVLFGFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQ 267

Query: 273 LGEFDSIREILTSATITTLVDLPFALFFLIVIYIVAGDLAVIPVVGGMIIIGFTLYTQPK 332
           L E + IRE++TS+T+ T+VDLPF   F+IV+ I+A  LA I  V  +++I   +  Q K
Sbjct: 268 LRELEQIREMITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKK 327

Query: 333 LKAAIEEGNKFSSLKHGHLIESLSALESIKANGAEGIVQKSWQQMIGHSANWQLKSKKLS 392
           L     +    ++L++  L+ES+  LE IK   AE    + W   I  +    L+++KL+
Sbjct: 328 LAVLANQAAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLT 387

Query: 393 NSVSNTANFIVQFTVVCVVILGVYRVSDNLISMGGIIAAVMLSSRAIAPMAQLAGLMTRA 452
             + +    +       V++ G   V +  ++ G ++AA ML SR IAPMA L G++ R 
Sbjct: 388 QGLISWGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARW 447

Query: 453 NHTASALRQLNELMLQEDEFENKGHLVSKQRLIGKINADHVGFSYPGSEKPV-LHPLSLT 511
               +A   L+ +M    E ++   L+ +  L G    ++  F Y   ++ + L  + L 
Sbjct: 448 QQVKAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLE 507

Query: 512 INPGERIAIIGRNGSGKSTLAKLLVGLFQPTTGSLRYDGVDSAQIHPSDLRRNFGYLPQD 571
           I PGERIAI+GRNG+GKSTL + + G  +   G  R D +  + I  +DLRRN G+L Q+
Sbjct: 508 IMPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQN 567

Query: 572 VTLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVSQFTHLEAEGLDQQVGEGGMSLSRGQR 631
             LF GT+R+N+  G     + Q+  A+++SG + F    A+GLD  + EGG  LS GQR
Sbjct: 568 ARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSGGQR 627

Query: 632 QTVALARATLNDPPVLLMDEPTASLDARAEQQFIRSMQNVSKDRTLLLITHKMHLLQLVD 691
           Q++ LAR  L  P ++L+DEP+ASLD   E++FI+ +     +RTL++ TH++ +L+LV+
Sbjct: 628 QSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPILELVE 687

Query: 692 RIIVLERGHVVADGPKAEVL 711
           R++VL+ G +V D PKA+ L
Sbjct: 688 RVVVLKEGQLVMDAPKAQAL 707