Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., recombinase XerC from Pseudomonas simiae WCS417

 Score =  246 bits (628), Expect = 5e-70
 Identities = 142/297 (47%), Positives = 194/297 (65%), Gaps = 18/297 (6%)

Query: 9   LQQFEAYMQSERQLSAHTVRNYLYELQRGRELLPE-------GIDLLNVGREHWQQVLAK 61
           L  + A++++ERQ+S HT+  Y  +L +      +        +D+ ++     + ++A+
Sbjct: 5   LDAYCAHLRNERQVSPHTLEAYRRDLNKVLAYCEKQQISSWKALDIQSL-----RSLIAR 59

Query: 62  LHRKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHL 121
           LH+ G S RSLS  LSAV+    +L R G  + +PA GLS PK  + LPK +D D    L
Sbjct: 60  LHQAGQSSRSLSRLLSAVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQL 119

Query: 122 LEIDG---NDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIV 178
           L  DG   +D L  RD+AI+ELFYSSGLRL+EL  L+L  +      V+VLGKG+K R++
Sbjct: 120 L--DGAVEDDFLAHRDQAILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVL 177

Query: 179 PVGRYAIDAISAWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHP 238
           PVGR A +A+  WL  R      D+A+FV+++G+RL  R+IQ R+   G E+ L   +HP
Sbjct: 178 PVGRKAREALQLWLPLRLLTNPADDAVFVSQQGRRLGPRAIQVRVKAAG-ERELGQNLHP 236

Query: 239 HKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRAKK 295
           H LRHSFA+HMLESS DLRAVQELLGH ++ TTQIYT LDFQHLA VYD+AHPRAK+
Sbjct: 237 HMLRHSFASHMLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHLATVYDSAHPRAKR 293