Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 300 a.a., Tyrosine recombinase XerC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  291 bits (746), Expect = 1e-83
 Identities = 154/295 (52%), Positives = 202/295 (68%), Gaps = 14/295 (4%)

Query: 9   LQQFEAYMQSERQLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQVLAKL------ 62
           + +F  Y+  ERQLS  T+ NY  +L     L  E       G + WQQ  A +      
Sbjct: 10  VSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGE------TGLKSWQQCDAAIVRSFAV 63

Query: 63  --HRKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTH 120
              RKGL P SL+L LSA++ + ++L+  G ++ NPAKG+SAPK  + LPKNIDVD +  
Sbjct: 64  RSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNR 123

Query: 121 LLEIDGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPV 180
           LL+ID NDPL +RD+A++E+ Y +GLRL+EL  LD+  +  D  EV V+GKG+KER +P+
Sbjct: 124 LLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPI 183

Query: 181 GRYAIDAISAWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHK 240
           GR A+  I  WL+ R     ++ ALF+++ GKR+S R++Q R ++WG +Q L+  VHPHK
Sbjct: 184 GRNAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHK 243

Query: 241 LRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRAKK 295
           LRHSFATHMLESS DLR VQELLGH NLSTTQIYT LDFQHLA VYD AHPRAK+
Sbjct: 244 LRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 298