Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., site-specific tyrosine recombinase XerC (NCBI) from Escherichia coli BW25113

 Score =  290 bits (741), Expect = 4e-83
 Identities = 151/298 (50%), Positives = 203/298 (68%), Gaps = 14/298 (4%)

Query: 6   HSYLQQFEAYMQSERQLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQV------- 58
           H+ ++++  Y+  ERQLS  T+ NY  +L+       E       G + WQQ        
Sbjct: 5   HTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASEN------GLQSWQQCDVTMVRN 58

Query: 59  -LAKLHRKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDS 117
              +  RKGL   SL+L LSA++ + ++L+    ++ NPAKG+SAPK  + LPKNIDVD 
Sbjct: 59  FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118

Query: 118 LTHLLEIDGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERI 177
           +  LL+ID NDPL +RD+A++E+ Y +GLRL+EL  LD+  +  +  EV V+GKG+KER 
Sbjct: 119 MNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERR 178

Query: 178 VPVGRYAIDAISAWLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVH 237
           +P+GR A+  I  WL+ R     ED+ALF+++ GKR+S R++Q R ++WG +Q L+  VH
Sbjct: 179 LPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVH 238

Query: 238 PHKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPRAKK 295
           PHKLRHSFATHMLESS DLR VQELLGH NLSTTQIYT LDFQHLA VYD AHPRAK+
Sbjct: 239 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKR 296