Pairwise Alignments

Query, 299 a.a., integrase/recombinase XerC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 301 a.a., tyrosine recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  186 bits (473), Expect = 4e-52
 Identities = 106/294 (36%), Positives = 177/294 (60%), Gaps = 8/294 (2%)

Query: 7   SYLQQFEAYMQSERQLSAHTVRNYLYELQRGRELLPE---GIDLLNVGREHWQQVLAKLH 63
           ++++QFE Y++ ER LS +++  Y  ++++    + +   GI  L     H +  +++L 
Sbjct: 7   NHIKQFEYYLKIERSLSKNSISAYRRDMEKLSAFMKDAFPGITPLTTQLNHLRAFVSELA 66

Query: 64  RKGLSPRSLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLLE 123
             G+S  + +  +S VK + +F++    +E +PA  L APK  + LP  +  + +  LLE
Sbjct: 67  SLGISEYTQARVISGVKAFFKFMVYEDKLEEDPAILLEAPKLGRKLPDTLSYEEIVKLLE 126

Query: 124 -IDGNDPLTLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPVGR 182
            I    P   R++A++E+ YSSGLR++EL  L L  V  D   +R+LGKGNKER+VPVG+
Sbjct: 127 GIKLGTPEGHRNRAMLEVLYSSGLRVSELVELKLGMVYSDIGFLRILGKGNKERLVPVGK 186

Query: 183 YAIDAISAWLECRRQ----IPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHP 238
            A+  +  +L+  R      P  +  +F+  +GK+++   +   + K  +E  +  +V P
Sbjct: 187 DALRYLKLYLDEVRNHQKIAPGHEEYVFLNRRGKKMTRVMVFIFIKKLVEEVGIKKKVSP 246

Query: 239 HKLRHSFATHMLESSADLRAVQELLGHENLSTTQIYTSLDFQHLAKVYDNAHPR 292
           H  RHSFATH++E  ADLRAVQE+LGHE+++TT+IYT LD ++L +V  + HPR
Sbjct: 247 HTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDREYLRQVLTDFHPR 300