Pairwise Alignments

Query, 401 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 394 a.a., nucleoside permease from Pectobacterium carotovorum WPP14

 Score =  171 bits (434), Expect = 3e-47
 Identities = 113/411 (27%), Positives = 219/411 (53%), Gaps = 30/411 (7%)

Query: 1   MIQSILGIFVLLGVGLLFSDNRSLISWRAVIGAFGIIIALAFFVLATEIGADVLLAVSNT 60
           ++  IL    +  + LL S +R  I  R ++    I I LA+F+L + IG + + A +  
Sbjct: 4   VLHFILATAAIFLLALLVSHDRKRIRLRFIVQLLVIEILLAYFLLHSSIGLNAISAFAGL 63

Query: 61  VGKVFGYGTEGIKFAFGSLVNFSVEGIGFVWALQVLPQIIFTAALTSLLYYLGIMQWFVL 120
             K+  +  +G  F FG +   + +G+ F++ L VL  I+F +AL  +L +  I+   + 
Sbjct: 64  FEKLLSFANQGTDFVFGGM---NAQGLSFIF-LNVLCPIVFISALIGILQHWRILPLIIK 119

Query: 121 IIGGSLQKVLGTSRAESMNAAGNIILGQTEAPLLIKPYHRVLTRAQIFAVMVGGLSSIAG 180
            IG  L KV G  + ES NA   ++LGQ+E  ++ K     ++  +++ +    +S+++ 
Sbjct: 120 GIGTLLSKVNGMGKLESFNAVSTLMLGQSENFIVYKGILADMSPRRMYTMAATAMSTVSM 179

Query: 181 SILAGLAGMGVALNYLIMACFMSAPAGLMFAKLLI--------PETEPTVNEVPELPDDE 232
           SI++    M +   Y++ A  ++     MF+  +I        P+ EP + ++ +L +D+
Sbjct: 180 SIISAYMTM-LDAKYVVAALILN-----MFSTFIILSIINPYQPDDEPEL-KLEKLHEDQ 232

Query: 233 KPSSFIDAIAKGAIAGMGIAAIVGAVIIACIGLMALLNGGLGAIGELFGMPTLTVDMILG 292
              SF + + +  +AG  +A I+ A++I  + L+A +N     +   FG   ++   I+G
Sbjct: 233 ---SFFEMLGEYILAGFKVAMIIMAMLIGFVALIAAVNALFSTV---FG---ISFQAIMG 283

Query: 293 TLFAPVAWLIGIPWVEASTAGAFLGQKIAMNEFVAFANMGNV--ELSARSNAIMTIALCG 350
            +F+P+AWLIGIP  +   AG+ +  K+  NEFVA   +  +  E+S R   I+++ L  
Sbjct: 284 YVFSPLAWLIGIPSSDILNAGSIMATKLVANEFVAMIELKKIAAEMSPRGLGILSVFLIS 343

Query: 351 FANIGSVAMVCGALSKMIPQRAGLIGQLGMKVLLAATLANLMNAAIVSLFI 401
           FAN  S+ ++ GA+  +   +  ++ + G+K++  +TL +L++AA+  L +
Sbjct: 344 FANFASIGIIAGAIKGLNEAQGNVVSRFGLKLVYGSTLVSLLSAAVAGLVL 394