Pairwise Alignments

Query, 401 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 413 a.a., nucleoside:proton symporter from Magnetospirillum magneticum AMB-1

 Score =  234 bits (596), Expect = 4e-66
 Identities = 138/413 (33%), Positives = 225/413 (54%), Gaps = 17/413 (4%)

Query: 3   QSILGIFVLLGVGLLFSDNRSLISWRAVIGAFGIIIALAFFVLATEIGADVLLAVSNTVG 62
           Q ++GI  L+GV  L S++R  +SWR V+    +   LA  +L       + L +   V 
Sbjct: 4   QGLIGIIALIGVAFLLSEDRRAVSWRVVVAGLAVQGLLALLLLKVPAAKLLFLGLDRAVA 63

Query: 63  KVFGYGTEGIKFAFGSLVNFSVE------GIGFVWALQVLPQIIFTAALTSLLYYLGIMQ 116
            +      G  F FG +              GF+ A Q LP ++  +AL++LLY+  I+ 
Sbjct: 64  ALQTATRAGTSFVFGYVGGAPAPWTAANPASGFILAFQALPLVLLMSALSALLYHWRILP 123

Query: 117 WFVLIIGGSLQKVLGTSRAESMNAAGNIILGQTEAPLLIKPYHRVLTRAQIFAVMVGGLS 176
             V      L+K +G   A  ++A+    LG  EAPLLI+PY   L+R ++F VM  G+S
Sbjct: 124 VVVRAASRLLEKSMGVGGAVGVSASATAFLGMIEAPLLIRPYVGKLSRGELFLVMTAGMS 183

Query: 177 SIAGSILAGLAGM--GV---ALNYLIMACFMSAPAGLMFAKLLIPETEPTVNEVPELPDD 231
           +IAG+++   A    G+   A+ +L+ A  +S PAGLM  K+++P+    +    +L D 
Sbjct: 184 TIAGTVMVLYATFLDGIIPDAIGHLLTASLISVPAGLMIGKIMVPDC--ALTGAGKLGDG 241

Query: 232 EKPSSFIDAIAKGAIAGMGIAAIVGAVIIACIGLMALLNGGLGAIGELFGMPTLTVDMIL 291
              +  +DA+ KG + G+ +   + A+++  + L++L N GL  + E+ G P LT+  +L
Sbjct: 242 HDYAGSMDAVVKGTMDGVRLLVGIVAMLVVLVALVSLANAGLALLPEVAGAP-LTLQRVL 300

Query: 292 GTLFAPVAWLIGIPWVEASTAGAFLGQKIAMNEFVAFANMGNV---ELSARSNAIMTIAL 348
           G   APV W +GIP  E  TAGA +G K  +NE +A+ ++ ++    LSARS  IMT  L
Sbjct: 301 GWAMAPVVWAMGIPAGEMVTAGALMGTKTVLNELLAYLDLAHLPPEALSARSRLIMTYGL 360

Query: 349 CGFANIGSVAMVCGALSKMIPQRAGLIGQLGMKVLLAATLANLMNAAIVSLFI 401
           CGFAN+GS+ ++   LS M P+R   I  LG + +++ T+A+ +  ++V L +
Sbjct: 361 CGFANLGSLGILIAGLSVMAPERRAEIVALGGRSIISGTMASCLTGSMVGLLL 413