Pairwise Alignments

Query, 401 a.a., NupC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 421 a.a., NupC/NupG family nucleoside CNT transporter from Serratia liquefaciens MT49

 Score =  380 bits (976), Expect = e-110
 Identities = 203/418 (48%), Positives = 287/418 (68%), Gaps = 20/418 (4%)

Query: 4   SILGIFVLLGVGLLFSDNRSLISWRAVIGAFGIIIALAFFVLATEIGADVLLAVSNTVGK 63
           S++G+ VL+ + +L S NR  I+ R VI AF + +A+   VL   +G  +L  +S  V  
Sbjct: 2   SLVGMAVLIAIAVLLSSNRRAINLRTVIWAFVLQVAIGALVLYVPVGRAILGGMSAGVAN 61

Query: 64  VFGYGTEGIKFAFGSLVN---FSV-EGIGFVWALQVLPQIIFTAALTSLLYYLGIMQWFV 119
           V  YG +GI F FG LV+   F V  G GFV+AL+VLP I+F ++L ++LYYLGIMQ  +
Sbjct: 62  VIAYGNQGISFIFGGLVSDKMFEVFGGGGFVFALRVLPVIVFFSSLIAVLYYLGIMQLVI 121

Query: 120 LIIGGSLQKVLGTSRAESMNAAGNIILGQTEAPLLIKPYHRVLTRAQIFAVMVGGLSSIA 179
            ++GG LQK+LGTSR ES++A  NI +GQTEAPL+++PY   +T++++F VM GGL+S+A
Sbjct: 122 RVLGGGLQKLLGTSRTESLSATANIFVGQTEAPLVVRPYIATMTQSELFTVMCGGLASVA 181

Query: 180 GSILAGLAGMGVALNYLIMACFMSAPAGLMFAKLLIPETEPTVNE---VPELPDDEKPSS 236
           GS+LAG A MGV L YLI A FM+AP GL+FAKL++PETE T ++   +  + +DE+P++
Sbjct: 182 GSVLAGYAQMGVPLEYLIAASFMAAPGGLLFAKLMVPETEKTHDKDDAMKLIAEDERPAN 241

Query: 237 FIDAIAKGAIAGMGIAAIVGAVIIACIGLMALLNGGLGAIGELFGMPTLTVDMILGTLFA 296
            IDA A GA +GM +A  VGA+++A I L+ALLNG LG +G  F  P L++++ILG +F+
Sbjct: 242 VIDAAASGAASGMQLALNVGAMLLAFIALIALLNGILGGVGGWFDYPQLSLELILGWVFS 301

Query: 297 PVAWLIGIPWVEASTAGAFLGQKIAMNEFVAFANMGNV-------------ELSARSNAI 343
           P+A+LIG+PW EA  AG+F+GQKI +NEFVA+ N G                LSA + AI
Sbjct: 302 PIAFLIGVPWHEAMAAGSFIGQKIIVNEFVAYMNFGAYLRPDDVVAAEGLQVLSAHTKAI 361

Query: 344 MTIALCGFANIGSVAMVCGALSKMIPQRAGLIGQLGMKVLLAATLANLMNAAIVSLFI 401
           ++ ALCGFAN+ SVA++ G L  M P R   I + G+K + A TL+NLM+A I   F+
Sbjct: 362 ISFALCGFANLSSVAILLGGLGSMAPNRRHDIARFGLKAVAAGTLSNLMSATIAGFFL 419