Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 246 a.a., flagellar motor protein from Pseudomonas simiae WCS417

 Score =  213 bits (541), Expect = 4e-60
 Identities = 111/243 (45%), Positives = 158/243 (65%)

Query: 1   MSFIGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKRF 60
           +S IG+I+A V I+ GN +EGGH  AL + PA +IVIGGT+GA + Q P S    +M+  
Sbjct: 4   LSLIGIIMAFVAIIGGNYLEGGHLGALANGPAALIVIGGTVGAALLQSPLSSFKRAMQIL 63

Query: 61  KWLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDPFLHKGLELLVDGYEKDN 120
            W+IFP R DL    + ++  +   RK GLL +E   D   D +  KGL+LLVDG E + 
Sbjct: 64  VWIIFPPRVDLPGGIDRVVNWSLTARKEGLLGLEGVADAEPDSYARKGLQLLVDGAEPEA 123

Query: 121 IVEILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLLDAPDKLGGAIA 180
           I  ILE +   ++       KV+E+MGGY PT+GI+GAV GLIH MG L  P +LG  IA
Sbjct: 124 IRSILEVDFYTQESRDINAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLADPSQLGSGIA 183

Query: 181 VAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMTLTGITGIADGESPQRLQAQLNP 240
           VAF+ATIYGVA+AN++ LP  ++ K+ A + S ++EM L GI  IA+GE+P+ ++ +L  
Sbjct: 184 VAFVATIYGVASANLVLLPVASKLKSIAMRQSRYREMLLEGILSIAEGENPRSIELKLQG 243

Query: 241 YLE 243
           +++
Sbjct: 244 FMD 246