Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 265 a.a., flagellar motor protein MotA from Magnetospirillum magneticum AMB-1

 Score = 91.3 bits (225), Expect = 2e-23
 Identities = 70/253 (27%), Positives = 128/253 (50%), Gaps = 20/253 (7%)

Query: 4   IGVIVALVFILVGNLIE-GGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKRFKW 62
           IG  ++L+ I VG++IE   +    L L   ++VIGGT+ A    F    +  ++   K 
Sbjct: 7   IGFTLSLLLI-VGSIIELTTNFKIFLHLSGLLMVIGGTLAAAHVGFEMRYVRQALGNIKA 65

Query: 63  LIFP---LRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQI--DDPFLHKGLELLVDGYE 117
           + F     R  L      +I     ++K G+ ++E  +  +   D FL  G+ L+V GY 
Sbjct: 66  IFFSPKMARGMLTNEVARVIRWGYLLQKSGIQALESDVKSLKSQDAFLAYGVGLVVSGYT 125

Query: 118 KDNIVEILEKEIE--FEQHGIEQTVKVYEAMGGYCPTMGIVGAVFGLIHAMGLL-DAPDK 174
              +  +L+ ++E  F++H +  +V++ + M    P  G++  + GL+  +  + D P K
Sbjct: 126 GPEVRHMLDNQVETAFQRHTV--SVEILKYMASNAPAFGMMATLVGLVVMLDNMGDDPSK 183

Query: 175 LGGAIAVAFIATIYGVAAANIIFLPFGNRYKAFAHQ---LSLFKEMTLT-GITGIADGES 230
           LGG +AV  + T+YGV  A ++ +P   +    AHQ   +  F+ M +  G+  +A+  S
Sbjct: 184 LGGGMAVGLLGTLYGVLFARLVLMPAAEK----AHQRESIIRFRNMLVAEGLVMLAERRS 239

Query: 231 PQRLQAQLNPYLE 243
           P+ +Q  +N YL+
Sbjct: 240 PRFIQDAMNSYLD 252