Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 288 a.a., flagellar motor stator protein MotA from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 32/257 (12%)

Query: 4   IGVIVALVFILVGNLIEGGHPSALLDL-PAFMIVIGGT-IGATVAQFPFSVIIASM---- 57
           IG+++    +     I GG    +L   P  ++ IGG  I A +      VI  SM    
Sbjct: 5   IGIVLLFGLVFGSYAISGGKFEVILHAAPHELMAIGGAGIAAFLISNSLPVIKGSMAGLG 64

Query: 58  KRF---KWLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQI-DDPFLHKGLELLV 113
           K F   KW     + D  +    L ++   ++  G++++E  I++  +     K  ++L 
Sbjct: 65  KTFAGPKWK----KQDYKDLLSLLFQLTKTMKSKGVVALESHIEKPKESTIFQKYPKVLK 120

Query: 114 DGYEKDNIVEIL-----------------EKEIEFEQHGIEQTVKVYEAMGGYCPTMGIV 156
           D +  D I + L                 EK++E   H   +     + +    P +GIV
Sbjct: 121 DHFAVDFICDTLRMMTMNLEDPHQVEDAMEKQLEKHHHEHLENAHALQNLADGLPALGIV 180

Query: 157 GAVFGLIHAMG-LLDAPDKLGGAIAVAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFK 215
            AV G+I  MG + + P+ LGG I  A + T  GV  A  +  PF  R  A  ++ + + 
Sbjct: 181 AAVLGVIKTMGSITEPPEVLGGMIGGALVGTFMGVFLAYGLVGPFAARLTAIINEEAAYY 240

Query: 216 EMTLTGITGIADGESPQ 232
           ++  + +     G + Q
Sbjct: 241 KIIQSVLVAHLHGNAAQ 257