Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 295 a.a., proton conductor component of flagella motor from Escherichia coli BL21

 Score = 59.3 bits (142), Expect = 8e-14
 Identities = 59/253 (23%), Positives = 100/253 (39%), Gaps = 28/253 (11%)

Query: 4   IGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKRFKWL 63
           +G +V L  +  G L+ GG   AL      +I+ G  IG+ +       I  ++K    L
Sbjct: 5   LGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGSFIVGNNGKAIKGTLKALPLL 64

Query: 64  IFPLRTDLNERAEF------LIEIAGDVRKGGLLSIEDKI-----------------DQI 100
               R     +A +      L  +    R+ G+ S+E  I                 D +
Sbjct: 65  F---RRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIENPRESEIFASYPRILADSV 121

Query: 101 DDPFLHKGLELLVDGYEKDNIVE-ILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAV 159
              F+   L L++ G+     +E ++++EIE  +   E        +G   P  GIV AV
Sbjct: 122 MLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEVPANSLALVGDSLPAFGIVAAV 181

Query: 160 FGLIHAMGLLDAP-DKLGGAIAVAFIATIYGVAAANIIFLPFGNRYKAFAHQLSLFKEMT 218
            G++HA+G  D P  +LG  IA A + T  G+  A     P     +  + + S   +  
Sbjct: 182 MGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYGFISPLATVLRQKSAETSKMMQCV 241

Query: 219 LTGITGIADGESP 231
              +    +G +P
Sbjct: 242 KVTLLSNLNGYAP 254