Pairwise Alignments

Query, 244 a.a., chemotaxis motA protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 290 a.a., flagellar motor protein from Agrobacterium fabrum C58

 Score = 68.2 bits (165), Expect = 2e-16
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 27/242 (11%)

Query: 4   IGVIVALVFILVGNLIEGGHPSALLDLPAFMIVIGGTIGATVAQFPFSVIIASMKR---- 59
           IG+I+    I+ G +  GGH + L+     MI+ G  +G  +   P  V+  S K     
Sbjct: 5   IGLIITFGCIIGGYMAMGGHLNVLVQPFELMIIGGAGLGGFIMANPMKVVKDSGKALGEA 64

Query: 60  FKWLIFPLRTDLNERAEFLIEIAGDVRKGGLLSIEDKIDQIDDP---------------- 103
           FK  + P   +  +    L  +  D+R      IE  ID  ++                 
Sbjct: 65  FKHSV-PKERNYLDVLGVLYSLMRDLRTKSRNEIEAHIDNPEESSIFQSAPSVLKNKELT 123

Query: 104 -FLHKGLELLVDGYEKDNIVE-ILEKEIEFEQHGIEQTVKVYEAMGGYCPTMGIVGAVFG 161
            F+   + L++ G  + + +E ++++EIE   H   +       MG   P +GIV AV G
Sbjct: 124 SFICDYVRLIIIGNARSHEIEALMDEEIETILHDKLKPYHAITTMGDSFPAIGIVAAVLG 183

Query: 162 LIHAMGLL-DAPDKLGGAIAVAFIATIYGVAAANIIFLPFGNRYKAF---AHQLSLFKEM 217
           +I AMG + ++P+ LGG I  A + T+ G+  +  I  P  ++ K      H+L +  + 
Sbjct: 184 VIKAMGKINESPEVLGGLIGAALVGTMLGIILSYSICNPLASQVKIVRTKQHRLYIIVKQ 243

Query: 218 TL 219
           TL
Sbjct: 244 TL 245