Pairwise Alignments

Query, 287 a.a., conserved hypothetical protein TIGR00255 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 304 a.a., YicC/YloC family endoribonuclease from Variovorax sp. OAS795

 Score =  169 bits (429), Expect = 5e-47
 Identities = 110/280 (39%), Positives = 153/280 (54%), Gaps = 16/280 (5%)

Query: 18  GTASWEIRSVNQRYLETYLRLPEQFRSFEPVLRDRLRNRLSRGKVEVNLRYELADNSN-- 75
           G    EIRSVN R+L+   +LPE+ R  E  LR+ L  +L RGKVEV    E    +   
Sbjct: 31  GRLGVEIRSVNSRFLDLTFKLPEELRQHETALRELLTGKLKRGKVEVRAAIENTAQAGVV 90

Query: 76  -NELKLNQGLAKQLLDAASWLKQEAGQGEVNLTDILRWPGVLSSAEQDMDAIGADLMTAF 134
              +KL Q L        +WL       ++++ D+LR  G  S+A  D    G DL+   
Sbjct: 91  EPSVKLLQRLNGVQDGIKAWLPSAR---DLSVADVLRLAGGDSAARGDW---GGDLLDVT 144

Query: 135 DLAIDQFIEARGREGAAIKDMLLSRLDGVSEQIAIVREHMPKVMEYQRDKLTNRLAEIKG 194
             A+D  + AR REGA +  ML + L  +   +      +P+++E QR +   R  E  G
Sbjct: 145 GKALDALMSARQREGARLAKMLEAHLAQLRTLVEQAGPLIPQLVEQQRARFLERWQEAMG 204

Query: 195 -------ELDPARIEQEMILLAQKQDVAEEMDRLEAHVNEARRILKKGGSEGRRLDFMMQ 247
                  E    R   E    A + DVAEE+ RL +H++E  R+LKKGG  G+RLDF++Q
Sbjct: 205 LTGGTLPEAAQDRALNEATAFAIRIDVAEELTRLNSHLDEIERLLKKGGEIGKRLDFLIQ 264

Query: 248 EFNRESNTLASKSISTEITAAAVDLKVLIEQMREQIQNVE 287
           E +RE+NTL SKS + E+T   VD+KVLIEQMREQ+QN+E
Sbjct: 265 ELHREANTLGSKSAALELTRIGVDMKVLIEQMREQVQNIE 304