Pairwise Alignments

Query, 294 a.a., rarD protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., Uncharacterized inner membrane protein RarD from Pseudomonas sp. S08-1

 Score =  263 bits (671), Expect = 5e-75
 Identities = 139/282 (49%), Positives = 189/282 (67%), Gaps = 4/282 (1%)

Query: 8   KGILLAVSAYCMWGFAPLYFKLLHHVSATEILLHRVIWSFVFMVIIMMFIGGFGKLRQLF 67
           +G  L ++AY +WG  PLYFK +  V A EI+ HR IWS +F  +++      G  R+L 
Sbjct: 8   RGYALGIAAYLIWGLFPLYFKAIQAVPALEIIAHRAIWSALFGALLLALWKHPGWWRELR 67

Query: 68  KQPKQLIVLTITSLLIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGMLFLGERLRK 127
             P++L VL  + LLIA NWL+++WAVNN  ML+ASLGY+INPL+NVLLGML LGERLR+
Sbjct: 68  DNPRRLAVLAGSGLLIASNWLVYVWAVNNGRMLEASLGYYINPLINVLLGMLLLGERLRR 127

Query: 128 LQWFAVALASAGVLIQLISFGSIPIVSLALAGTFGLYALLRKKVNVDAKSGLLVETAILL 187
           LQW AV LA+ GVL Q+   GSIP VSL LA TFG Y L+RK+  V A  GL+VET +LL
Sbjct: 128 LQWVAVGLAALGVLQQVWQVGSIPWVSLVLALTFGFYGLIRKQAPVAALPGLVVETWLLL 187

Query: 188 PVALVYLVATLDSATANMLTNDWHLN--LLLMAAGIVTTIPLLCFAGAAVRIPLSMLGFF 245
           P+AL +L+  L  A  +     W  +  L L+AAG +T +PLLCF  AA  +P + LGF 
Sbjct: 188 PLALGWLL--LHPAAISTQPAFWSSSEALWLIAAGPITLVPLLCFNAAARHLPYTTLGFL 245

Query: 246 QYIGPSIMFILAVTLFNEPFDAEKSITFGFIWSALLVFTFDM 287
           QY+ P+++ + AV LF E  +  K ++F  IW+AL +++ D+
Sbjct: 246 QYLAPTLVLLQAVLLFGETLEPSKLLSFVCIWAALFIYSLDI 287