Pairwise Alignments

Query, 294 a.a., rarD protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 308 a.a., EamA family transporter RarD from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  191 bits (486), Expect = 1e-53
 Identities = 103/284 (36%), Positives = 161/284 (56%), Gaps = 4/284 (1%)

Query: 2   PDTEYRKGILLAVSAYCMWGFAPLYFKLL--HHVSATEILLHRVIWSFVFMVIIMMFIGG 59
           P     + +  A++ Y +WG  PL F  +  H   A EIL HR +WS     ++++  G 
Sbjct: 5   PSPNDPRAVGTAIACYTLWGLLPLLFMAMAAHGFGAPEILAHRAVWSVFVAGLVLLLAGQ 64

Query: 60  FGKLRQLFKQPKQLIVLTITSLLIAGNWLLFIWAVNNDHMLDASLGYFINPLLNVLLGML 119
           +G+ R++   P+ L  L +++LLI  NW L+++A  +   L+ASLGY+INPLLN+  G +
Sbjct: 65  WGEARRVLATPRTLAWLALSALLIGTNWSLYVFATTHHATLEASLGYYINPLLNMAAGAV 124

Query: 120 FLGERLRKLQWFAVALASAGVLIQLISFGSIPIVSLALAGTFGLYALLRKKVNVDAKSGL 179
              E++ +    A+ LA+ GV+IQ I+ G +PI+ L LA TF  YA++RK+V   A++GL
Sbjct: 125 LFREKIDRWSALAIGLAAVGVVIQTIALGHVPIIGLTLAVTFCAYAVIRKRVPASAQTGL 184

Query: 180 LVETAILLPVALVYLVATLDSATANMLTNDWHLNLLLMAAGIVTTIPLLCFAGAAVRIPL 239
            VE  +LLP+  V+L        A    +   L +  +  G  T IPL  FA +A R+PL
Sbjct: 185 FVECLVLLPIGAVFLAWLTTHGQAVGFASPSGL-IWALVNGPATVIPLALFAWSARRLPL 243

Query: 240 SMLGFFQYIGPSIMFILAVTLFNEPFDAEKSITFGFIWSALLVF 283
           S +GF Q++ P++ F   V    EP    + ++F FIW+   VF
Sbjct: 244 STVGFIQFLAPTLQFACGVAT-GEPLTLLRIVSFVFIWAGAGVF 286