Pairwise Alignments

Query, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 637 a.a., DNA helicase RecQ from Ralstonia solanacearum UW163

 Score =  506 bits (1304), Expect = e-148
 Identities = 280/607 (46%), Positives = 381/607 (62%), Gaps = 23/607 (3%)

Query: 17  LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMH----GITIVVS 72
           L  VFGY  FR  Q +++  V  G DCLV+MPTGGGKSLCYQ+PAL+ H    G  IVVS
Sbjct: 26  LHDVFGYSAFRGPQADIVTHVADGGDCLVLMPTGGGKSLCYQIPALVRHRRGQGAGIVVS 85

Query: 73  PLISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTADFI 132
           PLI+LM+DQV +L + GV AAYLNS+     + +V R L  G L L+YV+PERL+T  F+
Sbjct: 86  PLIALMQDQVAALEEAGVRAAYLNSALTGTEAAQVERDLAAGRLDLVYVAPERLMTPRFL 145

Query: 133 ERMQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNI 192
           E ++   + +FAIDEAHC+SQWGHDFRPEY  L  L + FPHVP +ALTATAD  TR  I
Sbjct: 146 ELLERSRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPHVPRIALTATADAVTRDEI 205

Query: 193 CERLGINPFKL-LSSFDRPNIRYTVAEKLNAANQLRQFL----LQQNG-SSGIIYCSSRR 246
            ERL +   ++ LSSFDRPNIRYT+ EK +A  QL +F+    L ++G  +GI+YC SR+
Sbjct: 206 VERLALGGERVFLSSFDRPNIRYTIVEKDSARQQLLRFIRAEHLGEDGCDAGIVYCLSRK 265

Query: 247 RVDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRF 306
           +V+E A+ L  QG  A  YHAGM  E R   Q  F K++  ++VAT+AFGMGI+K +VRF
Sbjct: 266 KVEETAQWLAEQGIRALPYHAGMDVETRARHQAIFRKEEGVVMVATIAFGMGIDKPDVRF 325

Query: 307 VVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGP-QQQVEFH 365
           V H D+PKS+E YYQETGRAGRDGL A A+M +  AD+ + R +I++S+     ++V   
Sbjct: 326 VAHLDLPKSLEGYYQETGRAGRDGLPANAWMAYGLADVVQQRRMIDESDADDVHKRVSTA 385

Query: 366 KLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRL 425
           KL+ +    E+  CRR  LL YF ES+ +PCGNCD CL PP+ ++ + +AQ  LSC+YR+
Sbjct: 386 KLDALLGLCESAGCRRVALLAYFGESS-QPCGNCDTCLSPPQTWDATREAQMALSCVYRV 444

Query: 426 GQ----RFGINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLA 481
            Q     FG   LI++LRG+    +    H+ LST+G+G   S   W  V RQL+  GL 
Sbjct: 445 QQASRVSFGAGQLIDILRGNATERVKQWHHETLSTFGVGDTLSEAAWRGVFRQLVAQGLL 504

Query: 482 SQDITRGSSITLNPSARPILKGE--VALMLAEPRIQLTSIKRKTTQSRVPLNYDRKLFAR 539
           + D     ++ L  +ARP+LKGE  V L     +++         + R     D  + A+
Sbjct: 505 AVDHGGHGALVLTDAARPVLKGEHSVTLRRQAEKVRAAPASGAKAERRADPAADLSVEAQ 564

Query: 540 -----LKTLRREIAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGG 594
                L+  R + A E  VP Y++F+D+TLA +A   P S   +  + G+G  KL R+G 
Sbjct: 565 MRWQALRVWRAQTAREHSVPAYVIFHDSTLAHIAESDPASREALAELPGIGVAKLDRYGQ 624

Query: 595 EFLDEIA 601
             LD +A
Sbjct: 625 ALLDVLA 631