Pairwise Alignments

Query, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 712 a.a., DNA helicase RecQ from Pseudomonas sp. SVBP6

 Score =  561 bits (1445), Expect = e-164
 Identities = 289/589 (49%), Positives = 400/589 (67%), Gaps = 7/589 (1%)

Query: 17  LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLIS 76
           L  +FGY  FR  Q  +IE V +G D LV+MPTGGGKSLC+Q+PAL+  G+ +VVSPLI+
Sbjct: 9   LKDIFGYDSFRGRQGAIIECVAKGGDALVLMPTGGGKSLCFQVPALLRPGLAVVVSPLIA 68

Query: 77  LMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTADFIERMQ 136
           LM DQV +L + GV AA LNS+   E   E+  ++  GE+K+LY++PERL+    ++ ++
Sbjct: 69  LMDDQVATLDELGVAAASLNSTLSAEQQRELAGRIRRGEVKMLYLAPERLVQPRMLDFLR 128

Query: 137 SLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICERL 196
           +L +++FAIDEAHC+SQWGHDFRPEY  LGQL +LFP+VP +ALTATAD  TR+ I  RL
Sbjct: 129 TLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPNVPRIALTATADMRTREEIVTRL 188

Query: 197 GI-NPFKLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIIYCSSRRRVDEVAERL 255
            + N  + LSSFDRPNI Y +  K     QL  FL ++ G++GI+YC SR++VD+VA  L
Sbjct: 189 HLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLGERRGNAGIVYCLSRKKVDDVAAYL 248

Query: 256 TLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPKS 315
             QGF A  YHAG+  E R   Q  FL ++  I+VAT+AFGMGI+K NVRFV H D+PKS
Sbjct: 249 CEQGFPALPYHAGLPAETRASNQRRFLNEEGLIMVATIAFGMGIDKPNVRFVAHLDLPKS 308

Query: 316 IEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQ-QQVEFHKLNTMAAFA 374
           +EAYYQETGRAGRDGL A+A+M +   D+  ++ +++ SE   + +++E HKL+ M A  
Sbjct: 309 LEAYYQETGRAGRDGLPADAWMAYGLQDMVMLKQMLQNSEGDERHKRIEQHKLDAMLALC 368

Query: 375 EAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRLGQRFGINHL 434
           E   CRRQ LL+YFDE   +PCG+CD C+D  + ++ +E A++ LS +YR GQR+G+ HL
Sbjct: 369 EETRCRRQTLLNYFDEELPQPCGHCDNCIDGVQTWDATEPARQALSAVYRTGQRYGVGHL 428

Query: 435 IEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQDITRGSSITLN 494
           ++VL G     I + GH+KL+ +G+GKD+S   W S+ RQL+  GLA  D+     + L+
Sbjct: 429 VDVLLGRDNEKIRNFGHEKLAVYGVGKDRSEHDWRSLFRQLVARGLADIDLEGYGGLRLS 488

Query: 495 PSARPILKGEVALMLAEPRIQLTSIKRKTTQSRVPLNY-----DRKLFARLKTLRREIAE 549
            S RP+L+GEV+L L +     TS K   +    P +      +R+ +  L+ LRR++AE
Sbjct: 489 DSCRPLLRGEVSLELRKDLKPQTSSKGGASSGGSPASQLVRGDEREQWEALRALRRKLAE 548

Query: 550 EQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLD 598
           E  VPPY++F D+TL EM    PTS  EM  V+GVG RKL R+G  FL+
Sbjct: 549 EHGVPPYVIFPDSTLLEMLRSQPTSLSEMGRVSGVGARKLERYGEAFLE 597