Pairwise Alignments

Query, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 716 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas sp. S08-1

 Score =  541 bits (1394), Expect = e-158
 Identities = 284/586 (48%), Positives = 392/586 (66%), Gaps = 4/586 (0%)

Query: 17  LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLIS 76
           L  VFGY  FR  Q  +IERV  G D LV+MPTGGGKSLC+Q+PAL+  G+ +VVSPLI+
Sbjct: 14  LKDVFGYDAFRGKQAAIIERVAAGGDALVLMPTGGGKSLCFQVPALLREGLAVVVSPLIA 73

Query: 77  LMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLTADFIERMQ 136
           LM+DQV +L + GV A  LNS+   E   ++  ++  GE+K LYV+PERL+    ++ +Q
Sbjct: 74  LMEDQVATLDELGVAAVALNSTLSAEEQRDIAERIRRGEIKFLYVAPERLVQPRMLDFLQ 133

Query: 137 SLP-LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICER 195
            LP L++FAIDEAHC+SQWGHDFRPEY  L QL +LFP+VP +ALTATAD  TR+ I +R
Sbjct: 134 RLPQLALFAIDEAHCVSQWGHDFRPEYLQLSQLAELFPNVPRIALTATADMRTREEIVQR 193

Query: 196 LGINPF-KLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIIYCSSRRRVDEVAER 254
           L +    + LSSFDRPNI Y +  K     QL  FL  + G +GI+YC SR++V+EVA+ 
Sbjct: 194 LHLERAERFLSSFDRPNIFYRIQPKDQPRKQLLAFLAARKGDAGIVYCLSRKKVEEVADF 253

Query: 255 LTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVHYDIPK 314
           L+ QGF A  YHAG+  E R   Q  FL ++  I+VAT+AFGMGI+K NVRFV H D+PK
Sbjct: 254 LSAQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFVCHMDLPK 313

Query: 315 SIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQ-QQVEFHKLNTMAAF 373
           S+EAYYQETGRAGRDGL A+A+M +   D+  ++ ++  SE   + +++E HKL+ M A 
Sbjct: 314 SLEAYYQETGRAGRDGLPADAWMAYGLQDVVFLKQMLANSEGDERHKRIEQHKLDAMLAL 373

Query: 374 AEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRLGQRFGINH 433
            E   CRRQ LL YFDE   +PCG+CD C+D  + ++ +E A++ LS IYR GQR+G+ H
Sbjct: 374 CEETRCRRQALLAYFDEVLEKPCGHCDTCVDNVQTWDATEPARQALSTIYRSGQRYGVGH 433

Query: 434 LIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQDITRGSSITL 493
           L+++L G +   I   GH  L  +GIGK  +   W ++ RQL+  GLA  D+     + L
Sbjct: 434 LVDILLGRENDKIRASGHQHLPVFGIGKALAEGDWRTLFRQLVARGLADVDLDGYGGLRL 493

Query: 494 NPSARPILKGEVALML-AEPRIQLTSIKRKTTQSRVPLNYDRKLFARLKTLRREIAEEQD 552
           + + RP+L+GEV L L  + + Q  +    ++ S++    +R+ +  L+TLRR++AEE  
Sbjct: 494 SDACRPLLRGEVTLELRRDLKPQQAAKASGSSASQLVRGEEREQWEALRTLRRKLAEEHS 553

Query: 553 VPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLD 598
           VPPY++F D+TL EM    P +  EM  V+GVG RKL R+G  FL+
Sbjct: 554 VPPYVIFPDSTLLEMLRSQPRNLSEMAQVSGVGARKLERYGEAFLE 599