Pairwise Alignments

Query, 607 a.a., ATP-dependent DNA helicase RecQ (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 604 a.a., DNA helicase RecQ from Bacteroides stercoris CC31F

 Score =  492 bits (1267), Expect = e-143
 Identities = 258/605 (42%), Positives = 374/605 (61%), Gaps = 21/605 (3%)

Query: 15  ERLAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPL 74
           + L   FGY  FR  Q E+I  +  G D LV+MPTGGGKS+CYQLPAL+  G  +VVSPL
Sbjct: 3   QTLKTYFGYDSFRPLQEEIIRHILDGNDALVLMPTGGGKSICYQLPALLREGTAVVVSPL 62

Query: 75  ISLMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPERLLT-ADFIE 133
           ISLMKDQV++L   G++A  LNSS     +  + R    G LKLLY+SPE+LL  A+++ 
Sbjct: 63  ISLMKDQVEALCANGISAGALNSSNDETENAALRRACTEGRLKLLYISPEKLLAEANYL- 121

Query: 134 RMQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNIC 193
            ++ + +S+FAIDEAHCISQWGHDFRPEYA +G L Q FPHVP++ALTATAD+ TR++I 
Sbjct: 122 -LRDMHISLFAIDEAHCISQWGHDFRPEYAQMGILHQQFPHVPIIALTATADKITREDII 180

Query: 194 ERLGIN-PFKLLSSFDRPNIRYTVA---EKLNAANQLRQFLLQQNGSSGIIYCSSRRRVD 249
            +L +N P   +SSFDRPN+  TV    ++   +  +  F+ +  G SGIIYC SR + +
Sbjct: 181 RQLHLNHPRTFISSFDRPNLSLTVKRGYQQKEKSKTILDFIARHPGESGIIYCMSRSKTE 240

Query: 250 EVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFVVH 309
            VA+ L  QG     YHAG++P  R E QD F+ D++ +V AT+AFGMGI+KSNVR+V+H
Sbjct: 241 SVAQMLQKQGIRTAVYHAGLSPSLRDEAQDDFINDRVQVVCATIAFGMGIDKSNVRWVIH 300

Query: 310 YDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVEFHKLNT 369
           Y++PKSIE++YQE GRAGRDGL ++  + +  AD+  +     +S    QQ +   KL  
Sbjct: 301 YNLPKSIESFYQEIGRAGRDGLPSDTLLFYSLADLILLTKFATES---GQQNINLEKLQR 357

Query: 370 MAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGSEDAQKVLSCIYRLGQRF 429
           M  +AE+  CRR++LL YF E A   CGNCD+C +PP+R++G+   QK LS I R  Q+ 
Sbjct: 358 MQQYAESDICRRRILLSYFGEIADHDCGNCDVCKNPPERFDGTVIVQKALSAIVRTDQQI 417

Query: 430 GINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGLASQDITRGS 489
           G + L+++LRG+    +V +G+ +L T+  G+D     W   + Q++ LG         +
Sbjct: 418 GTSVLVDILRGNMSPEVVGKGYQQLKTFAAGRDVPARDWHDYLLQMLQLGYFEIAYNENN 477

Query: 490 SITLNPSARPILKGEVALMLAEPRIQLTS-----IKRKTTQSR------VPLNYDRKLFA 538
            + +  +   +L G     L   R + T+      KRK T         +P   +  LF 
Sbjct: 478 HLKITSAGSDVLFGRATARLVVIRREETNETKRGRKRKATVPAQELPLGLPNTENEALFE 537

Query: 539 RLKTLRREIAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLD 598
            L+ LR+ +A+E+ +P Y+V +D  L  ++   PT+  E   ++G+GE K  ++G EF++
Sbjct: 538 ALRKLRKRLADEEALPAYIVLSDKVLHLLSTSRPTNLEEFGNISGIGEHKKKKYGKEFIN 597

Query: 599 EIAAY 603
            I  Y
Sbjct: 598 LIRKY 602