Pairwise Alignments

Query, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 323 a.a., DMT family transporter from Serratia liquefaciens MT49

 Score =  164 bits (414), Expect = 4e-45
 Identities = 99/304 (32%), Positives = 156/304 (51%), Gaps = 3/304 (0%)

Query: 41  LGLLFISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALIVSILVQWSAGSLKQFAAL 100
           +G+       + WG LPIA+K     ++P T+ W+RF +A +   ++    G L      
Sbjct: 9   IGIFLAVTTAVCWGALPIAMKEVLVVMEPFTVVWYRFTIAALGLGIILAVRGRLPPVTMF 68

Query: 101 DAKVWLRLI-LAGLFLMLNYVSFVYSLDYLAPGAAQLNFQTSPFFLAFGGVLFFKERLNA 159
               WL ++ +A   L+ N++ F  SL YL+P A+Q+  Q SP  + F  VL  KER+  
Sbjct: 69  RQPRWLLILAIATAGLLGNFIFFSSSLQYLSPTASQVIGQLSPVGMMFASVLVLKERMRI 128

Query: 160 IQLSCFASLALGMLMFFHPFLDFSATDNHEIWLGVMIVQFSALSWTTYALLQKSLLNRLS 219
            Q+     L  G+L+FF+  L    T   +  LGV++   +A+ W TY + QK LL RL+
Sbjct: 129 TQVIGALMLICGLLLFFNVSLIEIFTRLTDYTLGVLLGVCAAMVWVTYGVAQKVLLRRLA 188

Query: 220 PANVLLVIYALGIFAMAPFSDFSQFAQMNSFDWQVALFCAANTLIAYGCFGQSMKYWPTA 279
              +L+++Y L   A+ P +      Q++ +     LFC ANTLI YG   ++M  W  A
Sbjct: 189 SPQILVMLYTLCAIALFPLAKPEVIFQLSGWQLACLLFCGANTLIGYGALAEAMARWQAA 248

Query: 280 QVSAMLALTPVFSFSATALVVSIGWWPEVFRADELDALSLFGIGVIIVSVMVVQLLPLYR 339
           QVSA++ LTP+F+   + L+     WP VF A  L+ +   G  V++   M   +   + 
Sbjct: 249 QVSALITLTPLFTLLFSDLLALA--WPHVFAAPTLNVVGYVGAFVVVAGAMFSAIGHRWW 306

Query: 340 QRRA 343
            RRA
Sbjct: 307 PRRA 310



 Score = 26.2 bits (56), Expect = 0.001
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 189 EIWLGVMIVQFSALSWTTYALLQKSLLNRLSPANVL---LVIYALGI-FAMAPFSDFSQF 244
           ++ +G+ +   +A+ W    +  K +L  + P  V+     I ALG+   +A        
Sbjct: 6   QVGIGIFLAVTTAVCWGALPIAMKEVLVVMEPFTVVWYRFTIAALGLGIILAVRGRLPPV 65

Query: 245 AQMNSFDWQVALFCAANTLIA-YGCFGQSMKYWPTAQVSAMLALTPVFSFSATALVV 300
                  W + L  A   L+  +  F  S++Y        +  L+PV    A+ LV+
Sbjct: 66  TMFRQPRWLLILAIATAGLLGNFIFFSSSLQYLSPTASQVIGQLSPVGMMFASVLVL 122