Pairwise Alignments

Query, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 312 a.a., Predicted permeases from Kangiella aquimarina DSM 16071

 Score =  176 bits (445), Expect = 9e-49
 Identities = 94/298 (31%), Positives = 164/298 (55%), Gaps = 7/298 (2%)

Query: 40  QLGLLFISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALIVSILVQWSAGSLKQFAA 99
           QLGLL      L WG+LPIALK     +D VT+TW+RF  A  +  +             
Sbjct: 9   QLGLLLSLTTALLWGLLPIALKTLLDQMDAVTVTWYRFFSAAAILFIFLIYKRKSPNIKL 68

Query: 100 LDAKVWLRLILAGLFLMLNYVSFVYSLDYLAPGAAQLNFQTSPFFLAFGGVLFFKERLNA 159
           L   +   +I++ + L LNYV +++ ++ + P +AQ+  QT+P F+  GG+L FKE  N 
Sbjct: 69  LKGNILWLMIISVVGLSLNYVFYLFGVNLITPSSAQVMIQTAPMFMLLGGLLIFKESFNK 128

Query: 160 IQLSCFASLALGMLMFFHPFLDF---SATDNHEIWLGVMIVQFSALSWTTYALLQKSLLN 216
            Q   FA   +G+++FF+   +      T ++ + LG M +  +A+ W  YAL QK LLN
Sbjct: 129 QQWFGFACFVIGLILFFNLRFEEIFEQITGDYAVGLGWMFL--AAIVWAAYALAQKQLLN 186

Query: 217 RLSPANVLLVIYALGIFAMAPFSDFSQFAQMNSFDWQVALFCAANTLIAYGCFGQSMKYW 276
                 V+ +IY   +  ++P+S   Q  ++++  W + +FC  NTLIAYG F +++ +W
Sbjct: 187 NYRSDQVMFMIYLACVPLLSPWSSPGQALELDTLGWWLLIFCCLNTLIAYGAFAEALAHW 246

Query: 277 PTAQVSAMLALTPVFSFSATALVVSIGWWPEVFRADELDALSLFGIGVIIVSVMVVQL 334
             ++VSA+LA+TP+ +  +  ++    ++PE   ++ ++  S+ G  +++   M+  L
Sbjct: 247 EASRVSAILAITPLVTIGSMKILEY--FYPETLLSEPINIFSIAGALLVVTGSMITAL 302