Pairwise Alignments

Query, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 328 a.a., Permeases of the drug/metabolite transporter (DMT) superfamily from Kangiella aquimarina DSM 16071

 Score = 63.9 bits (154), Expect = 5e-15
 Identities = 71/307 (23%), Positives = 129/307 (42%), Gaps = 30/307 (9%)

Query: 40  QLGLLFISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALIVSILVQWSAGSLKQFAA 99
           QL    + +AV+ W    +A+KL+ +   P+   + R ++A  V I         +Q+  
Sbjct: 8   QLAFAGLILAVILWSASFVAMKLAIAEFGPIMTVFLRMILATAVLIFFLPPMAKKQQYQK 67

Query: 100 LDAKVWLRLILAGLFLMLNYVSFVYSLDYLAPGAAQLNFQTSPFFLAFGGVLFFKERLNA 159
            D   WL L+LA     L ++   Y+L Y     A +     P  +A G     KE+LN+
Sbjct: 68  GDW--WLLLLLALCEPCLYFIFESYALTYTTASEAGMVTALQPLLVAVGAYYLLKEKLNS 125

Query: 160 -IQLSCFASLALGMLMFFHPFLDFSATDNHEI---WLGVMIVQFSALSWTTYALLQKSLL 215
            + + C  ++ +G++     +L  S + +       LG  +   + L+ T Y LL + L 
Sbjct: 126 RLVVGCIIAV-VGVI-----WLTLSGSSSEHASNPMLGNALEFGAILAATGYCLLARRLS 179

Query: 216 NRLSPANVLLVIYALGIFAMAPFSDFSQFAQMNSFD------WQVALFCAANTLIAYGCF 269
            R SP  + L+   +G     P   F Q A + SFD        +        + A+ C+
Sbjct: 180 QRYSPVFLTLLQTVMGSIFFLPLI-FVQGAPI-SFDVSAEAVLAIMFLAFGVNIFAFTCY 237

Query: 270 GQSMKYWPTAQVSAMLALTPVFSFSATALVVSIGWWPEVFRADELDALSLFGIGVIIVSV 329
             + K  P +QV +++ L P+ +       +  GW       + L+ +     G+++  V
Sbjct: 238 NFAFKTMPASQVGSLMNLLPLGT-------MFFGW---ALLGETLNNMQYVAAGLVLFGV 287

Query: 330 MVVQLLP 336
           +  Q  P
Sbjct: 288 IWSQTKP 294