Pairwise Alignments

Query, 349 a.a., integral membrane domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., cysteine and O-acetyl-L-serine efflux system from Escherichia coli BL21

 Score = 66.6 bits (161), Expect = 8e-16
 Identities = 68/276 (24%), Positives = 121/276 (43%), Gaps = 35/276 (12%)

Query: 42  GLLFISVAVLFWGMLPIALKLSGSFIDPVTLTWFRFLVALIVSILVQWSAGSLKQFAALD 101
           G+L + V V+ WG+  + +K+    + P+ L   RF++    +I           F    
Sbjct: 6   GVLALLVVVV-WGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAI-----------FFVAR 53

Query: 102 AKVWLRLILAGLFLMLNYVSFVY---SLDYLAP-GAAQLNFQTSPFFLAFGGVLFFKERL 157
            KV L L+L G  L +++  F +   ++++  P G A L  Q   FF    G   F ERL
Sbjct: 54  PKVPLNLLL-GYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERL 112

Query: 158 NAIQLSCFASLALGMLMFFHPFLDFSATDNHEIWLGVMIVQFSALSWTTYALLQKSLLNR 217
           +  QL+  A    G+L+     ++ S    H   LG M+   +A SW    +  K +++ 
Sbjct: 113 HGKQLAGIALAIFGVLV----LIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSH 168

Query: 218 LS-PANVLLVIYALGIFAMAPF--------SDFSQFAQMNSFDWQVAL----FCAANTLI 264
            + PA + LVI++  +  + PF           S    + + D    L         T++
Sbjct: 169 STRPAVISLVIWS-ALIPIIPFFVASLILDGSASMIHSLVTIDMTTILSLMYLAFVATIV 227

Query: 265 AYGCFGQSMKYWPTAQVSAMLALTPVFSFSATALVV 300
            YG +G  +  + T +V+ +  L PV   ++ AL++
Sbjct: 228 GYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLL 263