Pairwise Alignments

Query, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 944 a.a., excinuclease ABC subunit UvrA from Pseudomonas sp. SVBP6

 Score = 1420 bits (3676), Expect = 0.0
 Identities = 698/943 (74%), Positives = 817/943 (86%), Gaps = 1/943 (0%)

Query: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKI IRGARTHNLKNI+LT+PRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120
           ARQFLS+MEKPDVD IEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLL+ARVG PRC
Sbjct: 61  ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC 120

Query: 121 PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID 180
           P H  PL AQTVSQMVD VL  PE S+LMLLAPV+  RKGEH+ + E L AQG++RAR++
Sbjct: 121 PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKGEHLAVFEELRAQGFVRARVN 180

Query: 181 GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG 240
           G++ +L + P L+   KHTIEVVVDRFKVR D+QQRLAESFETAL+L+ GIA+VASMD+ 
Sbjct: 181 GKLFELDELPKLEKQKKHTIEVVVDRFKVREDLQQRLAESFETALKLADGIALVASMDDE 240

Query: 241 TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL 300
             EE+IFSA FACP CG++++ELEP++FSFNNPAGACPTCDGLGV+QFFD  R++ N EL
Sbjct: 241 PFEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDTKRLV-NGEL 299

Query: 301 SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIAFKY 360
           +LA GAIRGWDRRN YYFQML SLA HY F +E PF +L  + +K++L+GSGK ++ FKY
Sbjct: 300 TLAEGAIRGWDRRNVYYFQMLGSLAAHYDFSLEIPFGELPAEQQKVILHGSGKQNVDFKY 359

Query: 361 INDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLREEARH 420
           +NDRGD+V R+HPFEGI+ N++RRYRETES  VR+ELAKF++TQ C  C G+RLR EARH
Sbjct: 360 LNDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLSTQPCPDCRGTRLRREARH 419

Query: 421 VFIGDLNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL 480
           V++G+  LP +T   IG+A  YF  L+ TG++ +IA+KILKE+ +RL FLVNVGL+YL+L
Sbjct: 420 VWVGEKTLPAVTCLPIGDASGYFGGLKLTGRRGEIADKILKEICERLQFLVNVGLDYLTL 479

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT 540
            RSA+TLSGGEAQRIRLASQIGAGLVGVMY+LDEPSIGLHQRDN+RLL TL HLRD+GNT
Sbjct: 480 DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLNHLRDIGNT 539

Query: 541 VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKRNIHI 600
           VIVVEHDEDAIR+AD+++DIGPGAGVHGG+++ +G   +++A  +S+TG+Y+SG+  I +
Sbjct: 540 VIVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGTPAEVMAHPDSLTGKYLSGRVKIAV 599

Query: 601 STPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAHK 660
              RT  + K  ++L GARGNNL+NVDL IPIGL TCVTGVSGSGKSTLIN+T F ++  
Sbjct: 600 PAKRTARNKKLSLKLKGARGNNLQNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSAT 659

Query: 661 MLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQE 720
            LNGA+  E AP+D   G++  DKVVDIDQSPIGRTPRSNPATYTG+FTPIRE+F+G  E
Sbjct: 660 ALNGASTLEAAPHDSCDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE 719

Query: 721 SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY 780
           SR+RGY  GRFSFNVKGGRCEACQGDGLIKVEMHFLPD+YVPCD CK KRYNRETLE++Y
Sbjct: 720 SRSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKY 779

Query: 781 KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL 840
           KGKNIHEVL+MT+E+AREFFDAVPA+ARKLQTLMDVGLSY++LGQSATTLSGGEAQRVKL
Sbjct: 780 KGKNIHEVLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKL 839

Query: 841 AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW 900
           ++ELSKRDTGKTLYILDEPTTGLHFADIQ LLDVLHRL+ HGNT+VVIEHNLDVIKTADW
Sbjct: 840 SRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADW 899

Query: 901 IIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLLERD 943
           I+DLGPEGG  GG I+  GTPEDVA    S+T  +LKPLLERD
Sbjct: 900 IVDLGPEGGSKGGQIIGFGTPEDVAEMKQSYTGYYLKPLLERD 942