Pairwise Alignments

Query, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 947 a.a., excinuclease ABC subunit UvrA from Magnetospirillum magneticum AMB-1

 Score = 1147 bits (2967), Expect = 0.0
 Identities = 577/946 (60%), Positives = 733/946 (77%), Gaps = 10/946 (1%)

Query: 4   IEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLKNI++ +PRDKL+VITGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 5   IRVRGAREHNLKNIDVDLPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTH 123
           FL LM+KPDV+ IEGLSPAISIEQK+TS NPRSTVGT+TEIYDY+RLL+ARVG P  P  
Sbjct: 65  FLELMQKPDVESIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPHSPAT 124

Query: 124 GQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARIDGEV 183
           G P+ +QTVSQMVD+V  M E +RL LLAP V GRKGE+ K L  L  +G+ R ++DG +
Sbjct: 125 GLPIESQTVSQMVDRVETMAEGTRLYLLAPFVRGRKGEYRKDLIELQKKGFQRVKVDGTL 184

Query: 184 CDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEGTTE 243
            ++ + P LD   KH IEVVVDR  V+  +  RLA+S ETAL L+ G+A+  + + G  E
Sbjct: 185 YEIDEVPQLDKKKKHDIEVVVDRLVVKPGLGNRLADSIETALSLADGLAIAENAETG--E 242

Query: 244 ELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPELSLA 303
             +FSA FACP  G+++ E+EPR+FSFNNP GACP CDGLGV+ +FDP+ VI NP LSL 
Sbjct: 243 RTVFSAKFACPVSGFTIEEIEPRLFSFNNPFGACPACDGLGVKLYFDPELVIPNPGLSLR 302

Query: 304 GGAIRGW-DRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIAFKYIN 362
            GAI  W    + YY Q L  LA+HY+F ++ P+E+L ++ R+++L+GSG + I   Y +
Sbjct: 303 EGAIAPWAGSTSQYYVQTLQGLAEHYRFKLDTPWEKLPERAREVILHGSGNEEIRIAYED 362

Query: 363 D-RGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLREEARHV 421
             RG    ++  FEG++ NM RRYRET+S+ +R++L++F  T  C++CGG+RL+ EA  V
Sbjct: 363 GFRGYHTEKS--FEGVIPNMARRYRETDSSYIREDLSRFQGTAPCETCGGARLKPEALAV 420

Query: 422 FIGDLNLPKLTVWSIGEALDYFDKLE--FTGQKAQIAEKILKEVRDRLGFLVNVGLNYLS 479
            +  L++ + T +SI  A D+F  L      +  +IA +IL+E+ DRLGFLV+VGL YL+
Sbjct: 421 KVRGLHISEATEFSILNARDWFADLHNHLRPKDQEIARRILREINDRLGFLVDVGLEYLT 480

Query: 480 LSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGN 539
           + R + +LSGGE+QRIRLASQIG+GL GV+YVLDEPSIGLHQRDN+RLL TL  LRD+GN
Sbjct: 481 MGRGSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLATLRRLRDIGN 540

Query: 540 TVIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKRNIH 599
           TVIVVEHDEDAIR AD+++D+GPGAG+HGG+V+ +G   +++A   S+TG+Y++G+ +I 
Sbjct: 541 TVIVVEHDEDAIRSADYLVDMGPGAGIHGGQVVSEGTPAQVMADPNSMTGRYLTGQDHIP 600

Query: 600 ISTPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAH 659
           +   R P + K+ + L GARGNNL+NVD  IP+G  TCVTGVSG GKSTL+ +T +K   
Sbjct: 601 LPALRRPGNGKR-LSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLYKALS 659

Query: 660 KMLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQ 719
           + L GA  ++P+P+DRI GME  DK++DIDQSPIGRTPRSNPATYTG F+PIR+ F    
Sbjct: 660 RRLMGAR-EQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELP 718

Query: 720 ESRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVR 779
           ES+ RGY+ GRFSFNVKGGRCEACQGDG+IK+EMHFLPDVYV CD CKGKRYNRETLE+ 
Sbjct: 719 ESKVRGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVQCDVCKGKRYNRETLEIT 778

Query: 780 YKGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVK 839
           ++GK+I +VL MTVE+A +FF AVPAI  K+ TL  VGL Y+ LGQ ATTLSGGEAQRVK
Sbjct: 779 FRGKSIADVLDMTVEEAADFFKAVPAIRDKMVTLQRVGLDYIHLGQQATTLSGGEAQRVK 838

Query: 840 LAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTAD 899
           LAKELSKR TG+TLYILDEPTTGLHF D++ LL+V+  L   GNT++VIEHNL+VIKTAD
Sbjct: 839 LAKELSKRSTGRTLYILDEPTTGLHFEDVRKLLEVIQALVDAGNTVLVIEHNLEVIKTAD 898

Query: 900 WIIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLLERDAQ 945
           WI+DLGPEGG GGG I+A GTPEDVA    S+T  +L P+L R ++
Sbjct: 899 WIVDLGPEGGDGGGRIVAAGTPEDVAACRESYTGHYLAPILGRKSR 944



 Score = 63.9 bits (154), Expect = 5e-14
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 3   KIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
           ++ + GAR +NLKN++  IP   L  +TG+SG GKS+L  +TLY            A +R
Sbjct: 612 RLSLIGARGNNLKNVDAHIPLGTLTCVTGVSGGGKSTLVIETLY-----------KALSR 660

Query: 63  QFLSLMEKPD----VDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEP 118
           + +   E+P     +D +E L   I I+Q      PRS   T T  +  +R  F  + E 
Sbjct: 661 RLMGAREQPSPFDRIDGMEYLDKIIDIDQSPIGRTPRSNPATYTGAFSPIRDWFTELPES 720

Query: 119 R 119
           +
Sbjct: 721 K 721