Pairwise Alignments

Query, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 940 a.a., excinuclease ABC subunit UvrA from Escherichia coli ECRC102

 Score = 1546 bits (4004), Expect = 0.0
 Identities = 755/940 (80%), Positives = 841/940 (89%)

Query: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60
           MDKIE+RGARTHNLKNINL IPRDKLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120
           ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEI+DYLRLL+ARVGEPRC
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC 120

Query: 121 PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID 180
           P H  PLAAQTVSQMVD VL  PE  RLMLLAP++  RKGEH K LE L++QGYIRARID
Sbjct: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180

Query: 181 GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG 240
           GEVCDL+DPP L+L  KHTIEVVVDRFKVR D+ QRLAESFETALELSGG AVVA MD+ 
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240

Query: 241 TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL 300
             EEL+FSANFACP CGYSM ELEPR+FSFNNPAGACPTCDGLGVQQ+FDPDRVI NPEL
Sbjct: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300

Query: 301 SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIAFKY 360
           SLAGGAIRGWDRRNFYYFQML SLADHYKFDVEAP+  LS  V K+VLYGSGK++I FKY
Sbjct: 301 SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKY 360

Query: 361 INDRGDVVVRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLREEARH 420
           +NDRGD  +R HPFEG+L+NM+RRY+ETES+AVR+ELAKFI+ + C SC G+RLR EARH
Sbjct: 361 MNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARH 420

Query: 421 VFIGDLNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDRLGFLVNVGLNYLSL 480
           V++ +  LP ++  SIG A+++F+ L+  GQ+A+IAEKILKE+ DRL FLVNVGLNYL+L
Sbjct: 421 VYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTL 480

Query: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT 540
           SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLL TLIHLRDLGNT
Sbjct: 481 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNT 540

Query: 541 VIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKRNIHI 600
           VIVVEHDEDAIR ADH+IDIGPGAGVHGGEV+ +GP+E I+A  ES+TGQY+SGKR I +
Sbjct: 541 VIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV 600

Query: 601 STPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFKIAHK 660
              R P +P++V++L GARGNNL++V LT+P+GLFTC+TGVSGSGKSTLINDT F IA +
Sbjct: 601 PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQR 660

Query: 661 MLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQE 720
            LNGAT+ EPAPY  I G+E  DKV+DIDQSPIGRTPRSNPATYTG+FTP+RE+FAG  E
Sbjct: 661 QLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPE 720

Query: 721 SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY 780
           SR RGY  GRFSFNV+GGRCEACQGDG+IKVEMHFLPD+YVPCD CKGKRYNRETLE++Y
Sbjct: 721 SRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY 780

Query: 781 KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL 840
           KGK IHEVL MT+E+AREFFDAVPA+ARKLQTLMDVGL+Y+RLGQSATTLSGGEAQRVKL
Sbjct: 781 KGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKL 840

Query: 841 AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW 900
           A+ELSKR TG+TLYILDEPTTGLHFADIQ LLDVLH+L+  GNTIVVIEHNLDVIKTADW
Sbjct: 841 ARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW 900

Query: 901 IIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLL 940
           I+DLGPEGG GGG IL +GTPE VA    SHTARFLKP+L
Sbjct: 901 IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940