Pairwise Alignments

Query, 209 a.a., DNA-binding nitrate/nitrite response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 215 a.a., hypothetical protein from Pseudomonas simiae WCS417

 Score =  165 bits (418), Expect = 5e-46
 Identities = 86/200 (43%), Positives = 129/200 (64%), Gaps = 1/200 (0%)

Query: 5   YSVLVVDDHPLLRKGICQLITSDPDFSLFGEVGSGLDALSSVATDEPDIVLLDLNMKGMT 64
           + +L+VDDHP++R G+ Q++  + D  + GE G+G +AL  +AT +PD+VLLD NM  M 
Sbjct: 7   HRILLVDDHPMMRHGMRQMLELEDDLHVVGEAGNGQEALDQIATLQPDLVLLDNNMPHMN 66

Query: 65  GLDTLNAMRQEGVTSRIVILTVSDAKQDVIRLLRAGADGYLLKDTEPDLLLDKLKNTMSG 124
           GL+TL  +R      ++++ TVSDA+ D+   LR  A+GYLLKD EP+L+++ +++ + G
Sbjct: 67  GLETLRRLRAMNYAGKVLLFTVSDAEDDIRDALRLDANGYLLKDMEPELVVEFIRDALQG 126

Query: 125 HRVISEEVAEYLYELKNAADEQEWVSSLTPRELQILQQLAEGLSNRMISEHLHISEGTVK 184
             VIS  +   L +   +      V  LT RE Q+L+ +A G SN++I   L I+EGTVK
Sbjct: 127 ALVISPGLTRVLAQALRSPQPHAAV-ELTERERQVLRTIAGGYSNKVIGHKLGITEGTVK 185

Query: 185 VHVKNLLRKANAKSRTEMAV 204
           VHVKN+L K   +SR E AV
Sbjct: 186 VHVKNVLHKLGLRSRVEAAV 205