Pairwise Alignments

Query, 491 a.a., RNA polymerase sigma-54 factor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

 Score =  551 bits (1421), Expect = e-161
 Identities = 292/498 (58%), Positives = 369/498 (74%), Gaps = 9/498 (1%)

Query: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEE--QFDAPS 58
           MK SL L++GQQLTMTPQLQQAIRLLQLS+L+LQQEIQ+AL+SNP+LE +EE   FD   
Sbjct: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD 60

Query: 59  ERKQDLADTDFSETSAQPQEQDNSTVD-IAESLTKESLPEELPMDTTWDEVFTASPNSGS 117
               ++     S+      ++   TVD + E    E +P ELP+DT W++V+  S +S  
Sbjct: 61  PLADNIEQKPNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASS-L 119

Query: 118 GASREDDMPFQGETS--EGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTED 175
            ++ +D+  F   TS  E L  HL WQ NL P S+TD  IA  +ID I++QGYL ++ E+
Sbjct: 120 PSNDDDEWDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEE 179

Query: 176 ILEAMGNPE--IELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFSPDTPHLENARM 233
           ILEA  +PE  IELDE+EAVL RIQ F+P G+ AR LSECLL+QL      T  L  A+ 
Sbjct: 180 ILEAF-DPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKTAWLTEAQR 238

Query: 234 LIKDHLDLIAARDFRLLMRKTKLKEDELRDSIALIQTLNPRPGLLITAVDEEYVVPDVSV 293
           L+ D++DL+ +RD+  LMR+ KLKED+LR  I L+Q+LNPRPG  I + + EYVVPDV V
Sbjct: 239 LVTDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIV 298

Query: 294 SKKNGRWVVELNPDCMPKINVNQQYAAMARSSKNQADSQFIRGHLQEAKWFIKSLESRNE 353
            K N RW+VELN + +P++ VN QYA   R +   AD+ F+R  LQEA+WFIKSL+SRNE
Sbjct: 299 RKDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNE 358

Query: 354 TLLKVANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLFE 413
           TL+KVA  IV++Q+GF EYG+EAMKP+VL+DIAEAV MHESTISRVTTQK+MHTP+G++E
Sbjct: 359 TLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYE 418

Query: 414 LKYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRTI 473
           LKYFFSSHV T +GGECSSTAIRA IKKLVAAENQKKPLSDSK+A LL  QGI VARRT+
Sbjct: 419 LKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTV 478

Query: 474 AKYREAMLIPPSNQRKSL 491
           AKYRE++ I PS++RK L
Sbjct: 479 AKYRESLGIAPSSERKRL 496