Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 877 a.a., ribonuclease R from Rhodanobacter sp. FW510-T8

 Score =  681 bits (1758), Expect = 0.0
 Identities = 370/802 (46%), Positives = 493/802 (61%), Gaps = 22/802 (2%)

Query: 2   IKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLRA 61
           ++DPH +RE  +Y  PIPSRE I+  L  +   +T   IA AL IH+E  LEALR+RL A
Sbjct: 43  VRDPHADREAQRYARPIPSREAILALLEERGELLTEARIAEALDIHEETDLEALRKRLAA 102

Query: 62  MERDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHG 121
           M RDG+L+  R   Y   +K+DLI+G VL + EGYGF +PDEGGDDL++S + M    HG
Sbjct: 103 MVRDGQLLLGRRGGYAPTQKLDLIAGVVLANAEGYGFLRPDEGGDDLYLSPQQMRAVMHG 162

Query: 122 DKVLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIASE 181
           D+VLA  VG+DR+GRR+  I  ++Q RS  +VGR  +D+G+  V  DD+R+ Q+++I   
Sbjct: 163 DRVLASVVGIDRRGRRQGAIAEVLQRRSPRLVGRVVIDNGVTLVAPDDRRLVQDVMIKPG 222

Query: 182 DRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAI 241
              GAR G +VV E+T  P       G++  VLG+++ P + +E+A+ ++DLPH W A +
Sbjct: 223 KEQGARSGQIVVAEITDPPTPQRGPIGEIRAVLGERLQPSLVVEMAIASHDLPHEWPAEV 282

Query: 242 EKKLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIAD 301
            +   ++   VT +++ GR DLR LPLVTIDG DARDFDDAVYAE K  GGWRL VAIAD
Sbjct: 283 LRDAAQVESVVTTAEREGRTDLRKLPLVTIDGADARDFDDAVYAEPKRGGGWRLIVAIAD 342

Query: 302 VSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISA 361
           VS+YV    ALD EA  R  S YFP  V+PMLPE +SNG+CSLNP V+RLCMV +M + A
Sbjct: 343 VSHYVLVGKALDKEAFERSTSTYFPGFVVPMLPETLSNGICSLNPKVERLCMVCDMLVDA 402

Query: 362 RGKLSGYKFYPAVMHSHARFTYTQV--AAMLEGGPIAPEHEALFVHLQCLQSLYLALDEQ 419
            G ++  KFY AVM SHAR TY +V  A  L       E   +   L+ L +LY A+  Q
Sbjct: 403 EGSVTRSKFYDAVMLSHARLTYDKVWQAVGLRDPDARHEVADVLPQLENLHALYKAMAAQ 462

Query: 420 RAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGE 479
           R  RGAI FET E +F  +    ++ +    RN AHK+IEECMI ANV AA F++K K  
Sbjct: 463 RRRRGAIDFETPEVKFRLDQTGGVESMGATERNDAHKLIEECMIAANVQAALFLEKRKVP 522

Query: 480 ILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLL 539
            L+R HE P  +K  + ++FL E  L M    E TPAD+  ++  + DRP+ ELIQ +LL
Sbjct: 523 ALFRAHEPPPAEKYEDLQQFLREFKLRMPPVDEVTPADFAEILRMVQDRPERELIQNVLL 582

Query: 540 RSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTPD 599
           R+   A Y PDN GHFGLAL+ YAHFTSPIRRYPDL++HR IRY L   K  A+  +TP 
Sbjct: 583 RAQSMAAYQPDNRGHFGLALQAYAHFTSPIRRYPDLLVHRAIRYALTGGK-PADYAYTPA 641

Query: 600 GGYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGL 659
           G        +  +   CS  ERRA+EA RDV +  KC +M+ H+G  F+ V+  VT+FGL
Sbjct: 642 G--------MAAMAIHCSQRERRAEEAERDVDERFKCAWMEKHIGSEFDGVVTGVTSFGL 693

Query: 660 FVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQ 719
           FV L++  + GLVHIS L +DYY FD  R+ L GE TG  +++GD V VKV   +L+DR+
Sbjct: 694 FVELDESKVSGLVHISQLMNDYYHFDATRKLLKGERTGAQFRLGDHVRVKVLRASLEDRK 753

Query: 720 IDLMMLGDSGKGGRRKAAPSRDKPMTARERVNREGAKMAKTAKSSGAKSKAGSGKAASKS 779
           ID  ++       R  AAP    P   +        +     K + AK+    G+AA   
Sbjct: 754 IDFRLVSP-----RTPAAP---PPAGGKAYDYAAAGERYSLPKKAAAKAPGVFGRAAKAI 805

Query: 780 KSKAGTKPKKSVKDTAKKPKAA 801
               G   +K V   A  P+ A
Sbjct: 806 GRAFG---RKEVAAEAPAPRRA 824