Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 839 a.a., ribonuclease R from Pseudomonas sp. S08-1

 Score =  780 bits (2014), Expect = 0.0
 Identities = 412/837 (49%), Positives = 549/837 (65%), Gaps = 38/837 (4%)

Query: 4   DPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLRAME 63
           DP   RE +KYENPIPSRE I+++L  + SP  R+ + A L +  EEQ EALRRRLRAME
Sbjct: 8   DPEAAREAEKYENPIPSRELILQHLAERGSPAAREELLAELGLTTEEQEEALRRRLRAME 67

Query: 64  RDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGDK 123
           RDG+L++TR  +Y   +K+DLI G + GH++G+GF  PD+G DDLF+S   M + F GD+
Sbjct: 68  RDGQLIYTRRGTYAPVDKLDLICGRISGHRDGFGFLVPDDGSDDLFLSPAQMRLVFDGDR 127

Query: 124 VLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIASEDR 183
            LA+  G+DR+GRRE  IV +I     +IVGR+  ++G+ FV AD+ +I QE+L+     
Sbjct: 128 ALARVSGLDRRGRREGAIVEVIARAHESIVGRYFEEAGIGFVEADNPKIQQEVLVTPGRT 187

Query: 184 NGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIEK 243
            GA+ G  V +++T  P    +  G + EV+G  MAPGMEI++ALR+YD+PH W  A+ K
Sbjct: 188 GGAKIGQFVEIKITHWPTSRFQPQGDIVEVIGNYMAPGMEIDVALRSYDIPHVWPDAVTK 247

Query: 244 KLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKP------SGGWRLWV 297
           + R++  +V E DK  RVDLR LP VTIDGEDARDFDDAVY E         SGGW+L+V
Sbjct: 248 EARKLKPQVEEKDKENRVDLRHLPFVTIDGEDARDFDDAVYCEKNSGRWKLFSGGWKLYV 307

Query: 298 AIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEM 357
           AIADVS+YV+  +ALD EA+ RGNSVYFP +V+PMLPE++SNGLCSLNPHVDRL MV EM
Sbjct: 308 AIADVSHYVKVGAALDEEAQKRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRLAMVCEM 367

Query: 358 TISARGKLSGYKFYPAVMHSHARFTYTQVAAML------EGGPIAPEHEALFVHLQCLQS 411
           ++S  G+L  Y+FY AV+HSHAR TY +V+ ML      EG  +  E++ +  HL+ L S
Sbjct: 368 SMSKSGELVDYQFYEAVIHSHARLTYNKVSYMLEQPKSSEGKALRDEYKEVLPHLKELYS 427

Query: 412 LYLALDEQRAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAK 471
           LY  L   R ERGAI FET ET+ +F   RKI +I P  RN AHK+IEECM+ ANV+ A+
Sbjct: 428 LYKVLLAARHERGAIDFETQETRIVFGSGRKIAEIRPTQRNDAHKLIEECMLAANVATAR 487

Query: 472 FVKKHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLE-PTPADYQNVMLQIADRPD 530
           F+  H+   LYRVH+ P  +++   K FL E GL++  G + P P DYQ ++  I  RPD
Sbjct: 488 FMLDHEIPSLYRVHDGPPAERVEKLKAFLGELGLALHKGKQGPVPKDYQKLLASIQGRPD 547

Query: 531 AELIQVMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLL----- 585
             LIQ ++LRS+ QA+Y+ DN GHFGL  E Y HFTSPIRRYPDL++HR IR ++     
Sbjct: 548 FHLIQTVMLRSLSQAVYSADNNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVIRSKRE 607

Query: 586 AKEKGEANEKWTPDGG-YHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVG 644
            K    A     P    Y Y    L++LGE+CS TERRADEATRDV +WLKCEFMQD VG
Sbjct: 608 TKHVQRAGAASMPKARIYPYDEAALEKLGEQCSMTERRADEATRDVVNWLKCEFMQDRVG 667

Query: 645 DTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGD 704
           +TFE VI + T FG+FV L D++++GLVH+++L  DYY FDP+  RL GE +G+ +++GD
Sbjct: 668 ETFEGVITAATGFGIFVELKDIYVEGLVHVTALPGDYYHFDPVHHRLSGERSGRSFRLGD 727

Query: 705 PVTVKVAAVNLDDRQIDLMM-----------LGDSGKGGRRKAAPSRDKPMTARERVNRE 753
            V VKV  V+LD+R+I+  +            G +G  GR+K AP            + +
Sbjct: 728 SVEVKVMRVDLDERKIEFELSEGKADKAPSGRGRAGSDGRKKPAPK----SAGFGNTDVQ 783

Query: 754 GAKMAKTAKSSGAKSKAGSGKAASKSKSKAGTKPKKSVKDTAK---KPKAAKRSTRK 807
            ++  K A   GAK K+G    A K   KAG   K + K  A    KP A++R  ++
Sbjct: 784 KSRDVKKALLDGAK-KSGGKAPAGKPAGKAGGHRKGAPKADAPAGGKPGASRRKAKR 839