Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 866 a.a., Ribonuclease R from Pseudomonas sp. RS175

 Score =  783 bits (2023), Expect = 0.0
 Identities = 419/850 (49%), Positives = 552/850 (64%), Gaps = 50/850 (5%)

Query: 4   DPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLRAME 63
           DP   RE +KYENPIPSRE I+ +L  + SP +R+ +     +  E+QLEALRRRLRAME
Sbjct: 8   DPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALRRRLRAME 67

Query: 64  RDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGDK 123
           RD +L++TR  +Y   +K+DLI G + GH++G+GF  PD+G DDLF+S   M + F GD+
Sbjct: 68  RDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMRLVFDGDR 127

Query: 124 VLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIASEDR 183
            LA+  G+DR+GRRE  IV ++     +IVGR+  + G+ FV+AD+ +I QE+L+     
Sbjct: 128 ALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEVLVTPGRN 187

Query: 184 NGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIEK 243
             A+ G  V V++T  P    +  G V EV+G  MAPGMEI++ALR YD+PH W  A+ K
Sbjct: 188 ANAKIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLK 247

Query: 244 KLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKP------SGGWRLWV 297
           +  ++  EV E DK  R+DLR LP VTIDGEDARDFDDAVY E +P      SGGW+L+V
Sbjct: 248 EAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEARPGKLRLFSGGWKLYV 307

Query: 298 AIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEM 357
           AIADVS YV+  SALD EA+ RGNSVYFP +V+PMLPE++SNGLCSLNPHVDRL MV EM
Sbjct: 308 AIADVSSYVKLGSALDAEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDRLAMVCEM 367

Query: 358 TISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAP------EHEALFVHLQCLQS 411
           TIS  G+++ Y FY AV+HSHAR TY +V+AMLE   +A       E+  +  HL+ L +
Sbjct: 368 TISKTGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKLAEARKLRGEYNDVLPHLKQLYA 427

Query: 412 LYLALDEQRAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAK 471
           LY  L   R  RGAI FET ET+ IF  +RKI +I P  RN AHK+IEECM+ ANV+ A+
Sbjct: 428 LYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLAANVATAE 487

Query: 472 FVKKHKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLE-PTPADYQNVMLQIADRPD 530
           F+KKH+   LYRVH+ P  ++L   + FL E GLS+  G E PTP DYQ ++  I DRPD
Sbjct: 488 FLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKEGPTPKDYQALLASIKDRPD 547

Query: 531 AELIQVMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKG 590
             LIQ ++LRS+ QA+Y+ DN+GHFGL  E Y HFTSPIRRYPDL+ HR IR ++  +  
Sbjct: 548 FHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKMN 607

Query: 591 EANEK----WTPDGGYHYQLDE--LDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVG 644
             + K     T      Y  DE  L+QLGE+CS +ERRADEATRDV +WLKCE+M+D VG
Sbjct: 608 TPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEYMKDRVG 667

Query: 645 DTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGD 704
           ++F  VI +VT FGLFV L D++++GLVH+++L  DYY FDP+  RL GE TG+ +++GD
Sbjct: 668 ESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRSFRLGD 727

Query: 705 PVTVKVAAVNLDDRQIDLMMLGD--SGKGGRRKAAPSRDKPMT----------------A 746
            V V+V  V+LD+R+ID  M     S   GR+K       P+T                A
Sbjct: 728 TVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAETAAPVTKAPAEPAPSKSGRRGAA 787

Query: 747 RERV------------NREGAKMAKTAKSSGAKSKAGSGKAASKSKSKAGTKPKKSVKDT 794
           +E+             N E  K  +  K+  A++KAG GKA   +  KA +KP K  K  
Sbjct: 788 KEKAVEAYRPSDAAAKNAEVRKSREMKKALLAEAKAG-GKAGRSAPEKAASKPSKHRKGP 846

Query: 795 AKKPKAAKRS 804
            K   A  +S
Sbjct: 847 PKAGSAPAKS 856