Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 825 a.a., ribonuclease R from Dickeya dianthicola 67-19

 Score =  919 bits (2374), Expect = 0.0
 Identities = 462/823 (56%), Positives = 590/823 (71%), Gaps = 19/823 (2%)

Query: 1   MIKDPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAAALQIHDEEQLEALRRRLR 60
           M +DP  ERE +KYE+PIPSREYI+E+L  + +PI+R+ +A  LQ+  EEQLEALRRRLR
Sbjct: 1   MSQDPFLEREAEKYESPIPSREYILEHLAKRDTPISREELATDLQLTGEEQLEALRRRLR 60

Query: 61  AMERDGELVFTRGQSYGLPEKMDLISGTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFH 120
           AMERDG+LVFTR Q Y LPEK+DL+ GTVLGH++GYGF + +   DDL++S   M    H
Sbjct: 61  AMERDGQLVFTRRQCYALPEKLDLLRGTVLGHRDGYGFLRVEGRKDDLYLSAEQMKTVIH 120

Query: 121 GDKVLAQKVGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILIAS 180
           GD VLAQ +G DR+GRRE RIVR+++PR+  IVGR+  ++G  FV+ DD R++ +ILI S
Sbjct: 121 GDVVLAQPLGEDRRGRREGRIVRILEPRTNQIVGRYFTEAGTGFVVPDDSRLSFDILIPS 180

Query: 181 EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAA 240
           E   GAR G VVVVELT+R  R  KA GK+ E+LG  M  G+ ++IALR +++PH+W   
Sbjct: 181 EFIAGARMGSVVVVELTQRATRRTKAIGKIVEILGDNMGTGLAVDIALRTHEIPHSWPPK 240

Query: 241 IEKKLRRIPDEVTESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIA 300
           +E+++  + DEV E  K GR+DLRSLPLVTIDGEDARDFDDAVY E K  GGWRLWVAIA
Sbjct: 241 VEEQVSDLADEVPEDAKKGRIDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300

Query: 301 DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTIS 360
           DVSYYVR  +ALD EARARG SVYFPSQV+PMLPE +SNGLCSLNP VDRLCMV EMT+S
Sbjct: 301 DVSYYVRPGTALDHEARARGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 360

Query: 361 ARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGGPIAPEH-EALFVHLQCLQSLYLALDEQ 419
            +GKLSGY FY AVM SHAR TYT+V ++L+G     EH + L   L+ L  +Y  LD  
Sbjct: 361 TQGKLSGYTFYEAVMSSHARLTYTKVWSILQGDEALREHYQPLVAPLEELHQMYKVLDHA 420

Query: 420 RAERGAIAFETIETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGE 479
           R  RG IAFET E +FIFN +R+I+++    RN AHK+IEECMILAN+SAAKFV+K++  
Sbjct: 421 REVRGGIAFETEEAKFIFNAERRIERVEAVVRNDAHKLIEECMILANISAAKFVEKNEEP 480

Query: 480 ILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQVMLL 539
            L+RVH+ PSE  +   +  L E GL++ GG++P P DY  +M  IA RPD E++Q MLL
Sbjct: 481 ALFRVHDQPSEDHVLALRSVLGELGLTLKGGMKPQPKDYAELMNSIAGRPDHEMLQTMLL 540

Query: 540 RSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEKWTPD 599
           RSM+QA+Y P+N GHFGLAL  Y HFTSPIRRYPDL LHR I+YLL+  K     +WT  
Sbjct: 541 RSMKQAVYDPENRGHFGLALTSYGHFTSPIRRYPDLSLHRAIKYLLSDRKA----RWTHS 596

Query: 600 GGYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGL 659
           GG+H   +++ QLGE CS TERRADEATRDV+DWLKC+FMQDHVG+ F  +I+SVT FG 
Sbjct: 597 GGWHADFNDMLQLGEHCSMTERRADEATRDVADWLKCDFMQDHVGEAFTGIISSVTGFGF 656

Query: 660 FVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQ 719
           FVRLNDLFIDGLVH+S+L +DYY++D + QRLIGE  GQVY++GD V ++V AV++D+R+
Sbjct: 657 FVRLNDLFIDGLVHVSTLDNDYYRYDNVGQRLIGESRGQVYRLGDEVQIRVEAVHMDERK 716

Query: 720 IDLMML---------GDSGKGGRRKAAPSRDKPMTARERVNREGAKMAKTAKSSGAKSKA 770
           ID  +L         G + +   +K   +  KP   R    R   +     ++ G   + 
Sbjct: 717 IDFALLSSTRKVRGEGKTARDRAKKGGEADAKPPRRRRTGQRANVEPDNAFRTEGDGKRQ 776

Query: 771 GSGKAASKSKSKAGTKPKKSVKDTAKKPK-----AAKRSTRKK 808
            +GK   K+K+  G K +KS K+  K  K      AKR+ +KK
Sbjct: 777 PAGKGKDKAKAGGGKKTEKSQKNAEKTRKIAAATRAKRAGKKK 819