Pairwise Alignments

Query, 808 a.a., ribonuclease R (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 718 a.a., ribonuclease R from Bacteroides ovatus ATCC 8483

 Score =  349 bits (895), Expect = e-100
 Identities = 199/647 (30%), Positives = 339/647 (52%), Gaps = 27/647 (4%)

Query: 87  GTVLGHKEGYGFFKPDEGGDDLFISNRDMLMYFHGDKVLAQKVGMDRKGRREARIVRLIQ 146
           GT      G   F P+ GG+ +F++ R+     + DKV        +    E  ++ +++
Sbjct: 89  GTFQRKSNGKNSFIPEGGGEPIFVAERNSAHAMNNDKVKITFYAKRKNREAEGEVIEILE 148

Query: 147 PRSAAIVGRFHVDSGMAFVIADDKRITQEILIASEDRNGARQGDVVVVELTRRPGRFVKA 206
             +   VG   V    AF++ +++ +  +I I  +   G + GD  +V++T  P +    
Sbjct: 149 RANDTFVGTLEVAKSYAFLVTENRTLANDIFIPKDKLKGGKTGDKAIVKVTEWPDKAKNP 208

Query: 207 AGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSAAIEKKLRRIPDEVTESDKVGRVDLRSL 266
            G+V ++LG+      E+   L  + LP+ +  A+E    +IP E++  +   R D R +
Sbjct: 209 IGQVIDILGQAGDNTTEMHAILAEFGLPYVYPKAVETAADKIPAEISAEEIAKREDFRKV 268

Query: 267 PLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADVSYYVRTDSALDTEARARGNSVYFP 326
              TID +DA+DFDDA+       G W + V IADV++YV+  S +D EA  R  SVY  
Sbjct: 269 TTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKRATSVYLV 328

Query: 327 SQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISARGKLSGYKFYPAVMHSHARFTYTQV 386
            + IPMLPE++ N +CSL P+ ++L       I+ +G++   +    V++S  RFTY + 
Sbjct: 329 DRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTVINSDRRFTYEEA 388

Query: 387 AAMLEGGPIAPEHEALFVHLQCLQSLYLALDEQRAERGAIAFETIETQFIFNDQRKIDKI 446
             ++E      + E L      L ++  AL E+R   GAI F+  E +F  +++ K   +
Sbjct: 389 QQIIETKEGDFKEEVL-----TLDTIAKALREKRFSAGAINFDRYEVKFEIDEKGKPISV 443

Query: 447 VPRARNQAHKIIEECMILANVSAAKFV----KKHKGEIL-YRVHESPSEQKLANFKEFLA 501
             +    A+K++EE M+LAN + A+ +    K  K ++L YR+H+ P  +KL N  +F+A
Sbjct: 444 YFKESKDANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLPDPEKLENLSQFIA 503

Query: 502 ERGLSM--GGGLEPTPADYQNVMLQIADRPDAELIQVMLLRSMRQAIYTPDNEGHFGLAL 559
             G  +   G          +++  I  + +  LI+ + +R+M++A Y+  N GH+GLA 
Sbjct: 504 RFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKARYSTHNIGHYGLAF 563

Query: 560 EEYAHFTSPIRRYPDLVLHRVI-RYLLAKEKGEANEKWTPDGGYHYQLDELDQLGEECST 618
           E Y HFTSPIRR+PD+++HR++ +Y+              DGG      + + L +  S 
Sbjct: 564 EYYTHFTSPIRRFPDMMVHRLVTKYM--------------DGGRSVSEAKYEDLCDHSSN 609

Query: 619 TERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTNFGLFVRLNDLFIDGLVHISSLG 678
            E+ A  A R    + + EFM + +G  ++ VI+ VT +GL+V LN+   +GLV +  L 
Sbjct: 610 MEQIAANAERASIKYKQVEFMSERLGQIYDGVISGVTEWGLYVELNENKCEGLVPVRDLD 669

Query: 679 SDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQIDLMML 725
            DYY+FD     L G    ++Y +GD +TV+VA  NL+ +Q+D  ++
Sbjct: 670 DDYYEFDEKNYCLRGRRKNKIYSLGDAITVRVARANLEKKQLDFELI 716