Pairwise Alignments

Query, 246 a.a., RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 248 a.a., 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB from Pseudomonas putida KT2440

 Score =  286 bits (731), Expect = 4e-82
 Identities = 143/246 (58%), Positives = 184/246 (74%), Gaps = 2/246 (0%)

Query: 1   MKKQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVL 60
           M + + I+G+HAV+ALL+H P+R+ ++WL +GR + RL  L+  A      +    R+ +
Sbjct: 1   MSQLEKIYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREM 60

Query: 61  DEKAESTQHQGIVARVKAAKILAEHDLDELLAKTDLP-FLLILDGVTDPHNLGACLRNAD 119
           D   E   HQG+VA V  +++  E  L+ELL +T+ P  +L+LDGVTDPHNLGACLR AD
Sbjct: 61  DAWVEGV-HQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTAD 119

Query: 120 AAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGE 179
           AAG   +IVPKD S  LT VV KVACGAAE +PL  VTNLART+  LQ++G+W+VGTAGE
Sbjct: 120 AAGATAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGE 179

Query: 180 ADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFE 239
           A+ E+YQ DL GPL + MGAEGKG+RRL+RE CD LV +PM+GSVSSLNVSVATG+CLFE
Sbjct: 180 AEQEIYQQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFE 239

Query: 240 AVRQRR 245
           AVRQR+
Sbjct: 240 AVRQRQ 245