Pairwise Alignments

Query, 246 a.a., RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 280 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  123 bits (309), Expect = 3e-33
 Identities = 80/245 (32%), Positives = 124/245 (50%), Gaps = 5/245 (2%)

Query: 3   KQDIIFGIHAVEALLKHSPERIIELWLLQGREDERLTPLIRQAKAFGTSIQVTSRKVLDE 62
           K ++IFG   +        E + +++LL+G  +     ++ QAK F   + +   + LD 
Sbjct: 23  KSEMIFGSRPILEAFAAGKE-LEKVFLLRGSRNSTTDEIVAQAKRFEVPVVMVPVEKLDR 81

Query: 63  KAESTQHQGIVARVKAAKILAEHDL-DELLAKTDLPFLLILDGVTDPHNLGACLRNADAA 121
                 HQG VA +        +++   L  +   P +LILD VTD  N G+  RNA+  
Sbjct: 82  LTRKN-HQGAVAFISPITYQPLNEIITSLFEQGKNPLVLILDRVTDVRNFGSIARNAECM 140

Query: 122 GVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIVGTAGEAD 181
           GV  I++P      + A   K + GA   VP+ +  NL  T+ +L+E G  +V    + +
Sbjct: 141 GVDAIVIPSRGGAQINADAMKTSAGALNIVPVCREPNLKDTLEYLKEYGFQVVACTEKTE 200

Query: 182 CEL--YQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMSGSVSSLNVSVATGICLFE 239
            +L  Y  D+ GP AI MG+E  G+     +  D  + IP+ G + SLNVSVATGI L+E
Sbjct: 201 HQLSDYAVDMVGPTAIIMGSEEDGISPEYLKRADVKLRIPLMGQIGSLNVSVATGIILYE 260

Query: 240 AVRQR 244
           A+ QR
Sbjct: 261 AMIQR 265