Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 452 a.a., putative Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  184 bits (466), Expect = 6e-51
 Identities = 128/437 (29%), Positives = 216/437 (49%), Gaps = 14/437 (3%)

Query: 9   CVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTISAN 68
           C+ + L   A    A DL Q +       P+   A  ++ A  E      A LLP I+A+
Sbjct: 15  CLMVCLLGVAVQASAMDLKQAWDLLQYQGPIYRAAVHEKQAGGENRAIGEAGLLPQINAS 74

Query: 69  VGYDKAWNDPRD---------DSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYA 119
             +++     R          DS G   +++L Q +++          ++ A  + + + 
Sbjct: 75  AYFNQVNGSQRQNGQDNDLDYDSKG--ANVRLRQPLFNKQKMAEYRQGQQRADYSVAVFD 132

Query: 120 SALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQA 179
           +  Q+   R+  AYFDVL A +      A+  A E QL   K+R  +G   ITDV E+ A
Sbjct: 133 AKSQDAAVRLADAYFDVLLASETITLAKAKLSAFEEQLASAKRRMELGAGTITDVDESVA 192

Query: 180 QYDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIAE 239
           + DLA A  I A++ L N+   L E  G   +AL  L    FS     P +  +WL  A+
Sbjct: 193 RRDLAEADLIDAQDNLVNARRKLEEYIGETPQALTTLQAG-FSTPPLMPGNLQEWLVKAQ 251

Query: 240 TNSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLEQKLGDASEPDFDNMSVGI 299
            +S  +  +R    +A+E ++  ++GH P+L   AGY  G  Q + + ++ +  + S+G+
Sbjct: 252 ADSPLIHARRHSYALAEEEVNRARSGHYPTLDFVAGYTAGSSQSISELNQRNHYS-SIGL 310

Query: 300 NLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQ 359
            L++P++ G   S+  ++A     +A + L+ T + V+ N    Y  V +    I+A E+
Sbjct: 311 ELNIPLYSGGSTSALSRQASANSSKALDELDATRQEVISNTTREYRGVQSGALRIQALEK 370

Query: 360 SVISSESALKATQAGF-EVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAG 418
           +V S+E +L +T+ GF E GT T  DVLN    LYD++  L +A+ +Y+ S + L  + G
Sbjct: 371 AVASNERSLTSTRKGFKEGGTSTNSDVLNAEELLYDARHDLFEAKLNYLMSRLRLASSVG 430

Query: 419 TLNEDDVIAINNGLKAE 435
           +L +DD+  IN+ L  E
Sbjct: 431 SLGDDDIEQINDYLGPE 447