Pairwise Alignments

Query, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 457 a.a., type I secretion outer membrane protein, TolC family from Kangiella aquimarina DSM 16071

 Score =  261 bits (666), Expect = 4e-74
 Identities = 154/448 (34%), Positives = 255/448 (56%), Gaps = 23/448 (5%)

Query: 8   LCVALTLAASAHAVQAD-DLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLPTIS 66
           L     L+ S  + QA+ DLL++YQ AL NDP    ++A   A  + +  +R+ LLP +S
Sbjct: 9   LVTLAVLSLSGFSSQANTDLLEVYQDALKNDPQYKISEANLRATEQGVRISRSSLLPQVS 68

Query: 67  ANV------------GYDKAWNDP-RDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQ 113
           A+             G D + +DP  ++    T  ++L+Q ++D S WV L  AE     
Sbjct: 69  ASATKGMSDYDYSGQGLDGSPSDPFSNEVDSTTYRVQLSQSLFDWSRWVALEQAELRVRA 128

Query: 114 ADSTYASALQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITD 173
           A+ ++A++LQ+L++R  +AYF  L+ K+  E   +EK A+++QL+ T+++F  GL++ TD
Sbjct: 129 AELSHAASLQDLMTRTAQAYFQTLSRKEVLEATRSEKEALQQQLDLTREQFESGLSSATD 188

Query: 174 VHEAQAQYDLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTD 233
             +AQA +D A  SE++AEN   N+ EALREITG  +  L     N  +   P P++  D
Sbjct: 189 FLDAQANFDQAQVSELVAENEYTNAVEALREITGQYYSELEAAG-NEVTLTPPTPANIDD 247

Query: 234 WLKIAETNSVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKGLE--------QKLG 285
           W++ A   ++ L  ++    +A+E +   K+GH P+  LN  Y+            Q + 
Sbjct: 248 WMRAAREANLSLKAKQFDVRVAREEVKRNKSGHYPTADLNVTYSDQETETDRFFPIQNID 307

Query: 286 DASEPDFDNMSVGINLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYN 345
             +    D    GI +++P+F GF+ S++ ++++  Y++ +  L+Q+ R V KN R  Y 
Sbjct: 308 QNTLNMQDGYQAGITVTIPLFSGFRTSAETEQSKQNYLRTTHELDQSDRLVQKNARMAYT 367

Query: 346 NVGASISSIRAYEQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYS 405
           N+  SI S  A +++  SS ++L++TQ G++ GTR IVDVL  TR  Y ++R +  A+Y 
Sbjct: 368 NLQTSIKSFEANKRAYESSINSLESTQEGYQAGTRNIVDVLIATRSAYSAQRNMIRAKYD 427

Query: 406 YINSIVALKQAAGTLNEDDVIAINNGLK 433
           Y+ S + LK AAGTL E D+ A+NN L+
Sbjct: 428 YLISSLQLKAAAGTLTEKDIEAVNNLLE 455