Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 639 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  215 bits (548), Expect = 3e-60
 Identities = 124/349 (35%), Positives = 201/349 (57%), Gaps = 1/349 (0%)

Query: 36  LLATLCLIALAVILIFNINKLI-RHLRQLERAAHHLGEGDLSYQLDEKDAGVFNSVVHSI 94
           L++TL  + + VI    I + I R +++       +  GDLS+ +          +   I
Sbjct: 291 LISTLLALLVGVIAALVITRQITRPIQETLAVVERIASGDLSHNIQVTRRDELGVLQQGI 350

Query: 95  NRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMVSTV 154
            RMG  +   I  + D    +   A ++  ++EQ   GV  Q+ +T+  ATAM +M +TV
Sbjct: 351 QRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETDQVATAMHEMTATV 410

Query: 155 QEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTNSIS 214
           QEV++NA   + AA  A   A+ GDK++   + +I  +  ++ ++   + HL  ++N I 
Sbjct: 411 QEVARNAEQASLAAADADGQARAGDKVVAEAIAQIERLAAEVARSTDAMTHLQQESNKIG 470

Query: 215 SIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQQIT 274
           S+++ I  VAEQTNLLALNAAIE+ARAGE GRGFAVVADEVR LA+RT ++T EI+  + 
Sbjct: 471 SVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVA 530

Query: 275 ALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEEQHA 334
            LQ G QQ   VM  + ++ D +  +  +A  SL  I   V +I  M+ QIA A+E+Q A
Sbjct: 531 GLQNGTQQVANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAAAEQQSA 590

Query: 335 VAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRFHV 383
           VAEEI+++I  + +++ + A  ++ T  SS+++  +  ++  ++  F V
Sbjct: 591 VAEEISRSIVNVRDVSEQTATASDETAKSSVELARLGSQLQQMVSHFRV 639